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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataaaattgtgctgacagatttatcattttgctatccatttttggtagtttgttatcccttttgtatcttataatgtgatcttatctctggcagGTGGGGAGGAACTCTCATGAACTCTTTTCTGTTTAATGTGGGCCTTATTCTTCTTTGTTCCATTAG

Basic information

species Glycine max
transcript GLYMA16G19230.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G19230.1 (Glycine max), 3'ss of exon 9
lower sequence: AT3G08930.1 (Arabidopsis thaliana), 3'ss of exon 10
gtaataaaattgtgctgacagatttatcattttgctatccatttttggtagtttgttatcccttttgtatcttataatg-tgatcttatctc-tggcagGTGGGGAGGAACTCTCATGAACTCTTTTCTGTTTAATGTGGGCCTTATTCTTCTTTGTTCCATTAG
|||||  |  |   | |        || |||| |||||   |    |||  ||  ||| |   | |  ||     | ||   || | | ||  |  ||| |||||||  ||||| ||||||||||| || || ||||| ||||| |||||||||||||| || ||
gtaatccatcta-accggtttcaacattatttggctattt-tccaaggtcattcattaccttctcttgattgctgattggccatatcaacttatttcagATGGGGAGCTACTCTAATGAACTCTTTCCTCTTCAATGTCGGCCTCATTCTTCTTTGTTCAATCAG

upper sequence: GLYMA16G19230.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv08s0007g02270.t01 (Vitis vinifera), 3'ss of exon 10
gtaat-aaaattgtgctgacagatttatcattttgctatccatttttggtagtttgttatccctt--ttgtatcttataatgtgatcttatctctggcagGTGGGGAGGAACTCTCATGAACTCTTTTCTGTTTAATGTGGGCCTTATTCTTCTTTGTTCCATTAG
||||| |||||| || ||      ||  ||||||| |||   |  |||||  || || |||  ||  |  |  ||||       | ||| ||| |||||||||||| |  ||||| |||||||| ||||| ||||||||||| |||||||| || |||||||| ||
gtaatgaaaattatggtg------ttgccattttgttatgtttggttggtcatt-gtcatcttttggtgattgcttactgaaccaactt-tctttggcagGTGGGGTGCCACTCTTATGAACTCCTTTCTTTTTAATGTGGGACTTATTCTCCTGTGTTCCATCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttggtagtttgttatcccttttgtatcttataatgtgatcttatctctggcagGTGGGGAGGAACTCTCATGAACTCTTTTCTGTTTAATGTGGGCCTTATTCTTCTTTGTTCCATTAG
                                        tcttatctct  CT-rich tract
                    ttttgtatcttataat  TA-rich tract