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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgattactagttgagctagttaattaatccttttactatgtttatgcattggtggggcagggttgttcttgtttatgttgcaatttatatgctaagtagtgttgttatctattacagGATCTGCGTCTTGTGAGAGACAAGTTTACTCATGTCTCAAGGGGATTTGCATTTGTACACTTTTATTCG

Basic information

species Glycine max
transcript GLYMA16G18030.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G18030.1 (Glycine max), 3'ss of exon 9
lower sequence: AT3G54230.2 (Arabidopsis thaliana), 3'ss of exon 11
gtttgattactagttgagctagttaattaatccttttactatgtttatgcattggtggggcagggttgttcttgtttatgttgcaatttatatgctaagtagtgttgttatctattacagGATCTGCGTCTTGTGAGAGACAAGTTTACTCATGTCTCAAGGGGATTTGCATTTGTACACTTTTATTCG
                 | ||   ||  || ||||||    |  || |  |||           | | || |  ||||| |  || || |  || |        ||      | ||  ||||||| ||||||||||||||||| || |||||||| ||| | ||||||||||| || || || ||||||
-----------------gttaacaaa--aacccttttggattcgttgtctattaa---------gatattgtactttatatgtcagttgacctggttttcctctttccgccattttgtagGATCTTCGTCTTGTGAGAGACAAATTCACTCATGTTTCACGAGGATTTGCATTCGTGCATTTCTATTCG

upper sequence: GLYMA16G18030.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv02s0012g00870.t01 (Vitis vinifera), 3'ss of exon 9
gtttgattactagttgagctagttaattaatccttttactatgtttatgcattggtggggcagggttgttcttgtttatgttgcaatttatatgctaagtagtgttgttatctattacagGATCTGCGTCTTGTGAGAGACAAGTTTACTCATGTCTCAAGGGGATTTGCATTTGTACACTTTTATTCG
                                  |  | | || ||||   ||| |    | || ||    || |  || ||  || || |   ||   || | ||  |     || |||||||| || |||||  |||| || || |||||||| ||||||||||||||||||||||| ||| |||||
------------------------------gtactcaagtgtggttatt--ttgttaatactggttttcaattttacatcttctaagttttt--cttgctaattttaat-----ttgcagGATCTTCGACTTGTTCGAGATAAATTCACTCATGTATCAAGGGGATTTGCATTTGTACATTTTCATTCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttcttgtttatgttgcaatttatatgctaagtagtgttgttatctattacagGATCTGCGTCTTGTGAGAGACAAGTTTACTCATGTCTCAAGGGGATTTGCATTTGTACACTTTTATTCG
                   aatttatatgctaa  TA-rich tract