1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...ttagtctttttagctccttgtattgttgtctattgatattatgtatattaagacgggcactatcttctgttgaatacttccttttatttaaattctgcagCTTGCTAGTGTACATCTCTCTACACTGATCCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACA
species | Glycine max |
transcript | GLYMA16G17580.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CAAACTTGCCAGGGATATCAACTATCAGTTTCCACAG CTTGCTAGTGTACATCTCTCTACACTGATCCCATCCAGAAGTGATGATGCAEST: gi|208062337|gb|GD857685.1|GD857685
genomic: CAAACTTGCCAGGGATATCAACTATCAGTTTCCACAGgttaggtttt ... aattctgcagCTTGCTAGTGTACATCTCTCTACACTGATCCCATCCAGAAGTGATGATGCA
EST: GATATCAACTATCAGTTTCCACAG CTTGCTAGTGTACATCTCTCTACACTGATCCCATCCAGAAGTGATGATGCAEST: gi|193508916|gb|FK465512.1|FK465512
genomic: GATATCAACTATCAGTTTCCACAGgttaggtttt ... aattctgcagCTTGCTAGTGTACATCTCTCTACACTGATCCCATCCAGAAGTGATGATGCA
EST: GGGCAGATGGACTCAAACTTGCCAGGGATATCAACTACCAGTTTCCACAG CTTGCTAGTGTACATCTCTCTACACTGATCCCATCCAGAAGTGATGATGCAEST: gi|208281582|gb|GE078098.1|GE078098
genomic: GGGCAGATGGACTCAAACTTGCCAGGGATATCAACTATCAGTTTCCACAGgttaggtttt ... aattctgcagCTTGCTAGTGTACATCTCTCTACACTGATCCCATCCAGAAGTGATGATGCA
EST: ATGGACTCAAACTTGCCAGGGATATCAACTATCAGTTTCCACAG CTTGCTAGTGTACATCTCTCTACACTGATCCCATCCAGAAGTGATGATGCAEST: gi|193377218|gb|FK341889.1|FK341889
genomic: ATGGACTCAAACTTGCCAGGGATATCAACTATCAGTTTCCACAGgttaggtttt ... aattctgcagCTTGCTAGTGTACATCTCTCTACACTGATCCCATCCAGAAGTGATGATGCA
EST: GGGCAGATGGACTCAAACTTGCCAGGGATATCAACTATCAGTTTCCACAG CTTGCTAGTGTACATCTCTCTACACTGATCCCATCCAGAAGTGATGATGCAEST: gi|12690052|gb|BG156388.1|BG156388
genomic: GGGCAGATGGACTCAAACTTGCCAGGGATATCAACTATCAGTTTCCACAGgttaggtttt ... aattctgcagCTTGCTAGTGTACATCTCTCTACACTGATCCCATCCAGAAGTGATGATGCA
EST: GGCAGATGGACTCAAACTTGGCATGGATATCAACCT-TCAGTTTTCACAG CTTGCTAGTGTACATCTCTCTACACTGAACCCATTCAGAAATGATGATGCCEST: gi|193698058|gb|FK635769.1|FK635769
genomic: GGCAGATGGACTCAAACTTGCCAGGGATATCAAC-TATCAGTTTCCACAGgttaggtttt ... aattctgcagCTTGCTAGTGTACATCTCTCTACACTGATCCCATCCAGAAGTGATGATGCA
EST: CAGATGGACTCAAACTTGCCAGGGATATCAACTATCAGTTTCCACAG CTTGCTAGTGTACATCTCTCTACACTGATCCCATCCAGAAGTGATGATGCA
genomic: CAGATGGACTCAAACTTGCCAGGGATATCAACTATCAGTTTCCACAGgttaggtttt ... aattctgcagCTTGCTAGTGTACATCTCTCTACACTGATCCCATCCAGAAGTGATGATGCA
tattaagacgggcactatcttctgttgaatacttccttttatttaaattctgcagCTTGCTAGTGTACATCTCTCTACACTGATCCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACA
aatacttccttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttagtctttttagctccttgtattgttgtctattgatattatgtatattaagacgggcactatcttctgttgaatacttccttttatttaaattctgcagCTTGCTAGTGTACATCTCTCTACACTGATCCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - -ctccttg
- - - - - - - - - - - -tgttgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - -cgggcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgttg