Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tccccatcttttctttctccccacctctcccttgtttacataattataacattttatcagtcacttccttatgctgctatggaaatgcactctactgtagGTGAATGTCATGTTGAAAAAGCTCCCTGAAGAAGAGTTTGGTCCTCAAATAGATTTTAGAGAGTACTCAATACTTGATAATCCTTCTCTTCCATCAGAG

Basic information

species Glycine max
transcript GLYMA16G08350.3
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8282996|gb|BE020557.1|BE020557
EST:     GGTCCATGACTAGACAACCTTTTCTCTGTCCTTTGGACCACGTATTTGAG                         GTGAATGTCATGTTGAAAAAGCTCCCTGAAGAAGAGTTTGGTCCTCAAATA
genomic: GGTCCATGACTAGACAACCTTTTCTCTGTCCTTTGGACCACGTATTTGAGgtatttaagt ... tctactgtagGTGAATGTCATGTTGAAAAAGCTCCCTGAAGAAGAGTTTGGTCCTCAAATA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataacattttatcagtcacttccttatgctgctatggaaatgcactctactgtagGTGAATGTCATGTTGAAAAAGCTCCCTGAAGAAGAGTTTGGTCCTCAAATAGATTTTAGAGAGTACTCAATACTTGATAATCCTTCTCTTCCATCAGAG
 ttataac  putative branch site (score: 2)
                                            ctctact  putative PPT
     attttatca  TA-rich tract