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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaaaggaatctatatattgttctgggatttggctaaataataattcttactggaaagtgattgcaatcccatgcacctgaattagaatttcaaattggtagatatgtgacttttagaaaatggctttcctagTAGTTGGTTATCACAATGGTGGGCTTTGCCTCAAAGATCGAAGTATTGTGGAAGGCCTTTTTCTCAAGGGTGACATTCAAGTACTTTGCACTACAAATAC

Basic information

species Glycine max
transcript GLYMA16G07850.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G07850.1 (Glycine max), 3'ss of exon 9
lower sequence: LOC_Os02g40450.1 (Oryza sativa), 3'ss of exon 10
gtatgaaaggaatctatatattgttctgggatttggctaaataataattcttactggaaagtgattgcaatcccatgcacctgaattagaatttcaaattg-gtagatatgtgacttttagaaaatggctttcctagTAGTTGGTTATCACAATGGTGGGCTTTGCCTCAAAGATCGAAGTATTGTGGAAGGCCTTTTTCTCAAGGGTGACATTCAAGTACTTTGCACTACAAATAC---
               || | |   ||| |   | | |  |  |    |||  |    | | || ||    |||||||    |||  |      | | |||     |||  ||||    ||    ||  |     |   ||||||||||||||| ||||| |||||||| || ||| | ||| | || || || ||||| || |||||||| |||||| | |||||||| || |||||   
------------gtcatgt-tgaatcttgttctcgacccacgataccttcacaacctacaatggtt----tcccatgt-tttgatgtgttgcctaacattacactgattggtgatgcatatcttatttcaactttt-cagTTGGTTATCACAACGGTGGTCTTTGCCTAAAGGATAGGAGTGTCGTTGAGGGACTTTTCCTGAAGGGTGATATTCAAATTCTTTGCACGACGAATACTTT

upper sequence: GLYMA16G07850.1 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G346278_T01 (Zea mays), 3'ss of exon 7
---------------gtatgaaaggaatctata-tattgttctgggatttg---gctaaat------aataat------tcttactggaaagtgat----tgcaatcccatgcacctgaattag-------aatttcaaa---ttggtagat-atgtgacttttagaaaatggctttcctagTAGTTGGTTATCACAATGGTGGGCTTTGCCTCAAAGATCGAAGTATTGTGGAAGGCCTTTTTCTCAAGGGTGACATTCAAGTACTTTGCACTACAAATAC---
               ||      || | | ||| ||   | ||    ||||   |||  ||      | ||||      | ||  | ||||| ||     ||   |   | |  ||    ||||       | ||  |||   || || |||    | ||   |  ||    | |    |   |||||||| ||| |||||||| |||||| | ||||| ||| || |||| || || ||||| |||||||||||  ||||||| || ||||| ||||||||   
gttatctggaatcttgttccctgggcacccataataccttccttaactttgcaagctccattttttcagtaatgtcttcttttttttgaaagggaagcaatgtctttttaggtgcccatgttagttgatacacttataaaactttagttgattgcttaacagatgcaatcctgttccattttcagTTGGTTTTCATAATGGTGGTCTTTGCTTAAAAGACCGAGGTCTTGTTGAGGGGCTTTTCCTCAAGGGTGATCTTCAAGTTCTATGCACAACAAATACTTT

upper sequence: GLYMA16G07850.1 (Glycine max), 3'ss of exon 9
lower sequence: AT3G27730.1 (Arabidopsis thaliana), 3'ss of exon 9
gtatgaaaggaatctatatattgttctgggatttggctaaataataattcttactggaaagtgattgcaatcccatgcacctgaattagaatttcaaattggtagatatgtgacttttagaaaatggctttcctagTAGTTGGTTATCACAATGGTGGGCTTTGCCTCAAAGATCGAAGTATTGTGGAAGGCCTTTTTCTCAAGGGTGACATTCAAGTACTTTGCACTACAAATAC---
                                        ||  |   | | |||       | |||        | ||  ||  | || |||      ||  ||||   |   |   |  |||||   | || | |||||||||||||||||||||| |||||||  || || || ||  | || ||||| || || || || || || || |||||  | ||||| || || ||   
--------------------------------------gtatggtctgtttcactcttctaagtttgttgatt-gtacatttgcttcagcattgt---ctgcaagatgaatagttacca--aaatg---tcccaattagTTGGTTATCACAATGGTGGACTTTGCCAAAAGGACCGCAGCCTCGTAGAAGGGCTCTTCCTGAATGGAGATATCCAAGTTATCTGCACGACCAACACTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaattagaatttcaaattggtagatatgtgacttttagaaaatggctttcctagTAGTTGGTTATCACAATGGTGGGCTTTGCCTCAAAGATCGAAGTATTGTGGAAGGCCTTTTTCTCAAGGGTGACATTCAAGTACTTTGCACTACAAATAC
                                              ctttcct  CT-rich tract
     tagaatttcaaatt  TA-rich tract