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gtataaacaaggttaatttgatcatataagccatcaattgcaatcgacaagagacttcatagtatatatatattgattaactgattgcagtataatgaaactagttataacattgacacctttcacttataatgcttccagTTTGTATAACCTTGTCTCAACTGTAATGCTCTCAACTTTGGAGGATGGGACTATTGTAAAAGGCCTTGCTGGAATTCCTTCAGAGGGGCCTGTTTTGTTT
species | Glycine max |
transcript | GLYMA16G05580.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CCAACACCTGAAGAAGCCAGAAAAGTAACAGAATCATACAG TTTGTATAACCTTGTCTCAACTGTAATGCTCTCAACTTTGGAGGATGGGACEST: gi|254346772|gb|GR856494.1|GR856494
genomic: CCAACACCTGAAGAAGCCAGAAAAGTAACAGAATCATACAGgtataaacaa ... atgcttccagTTTGTATAACCTTGTCTCAACTGTAATGCTCTCAACTTTGGAGGATGGGAC
EST: TATATACCACCAACACCTGAAGAAGCCAGAAAAGTAACAGAATCATACAG TTTGTATAACCTTGTCTCAACTGTAATGCTCTCAACTTTGGAGGATGGGAC
genomic: TATATACCACCAACACCTGAAGAAGCCAGAAAAGTAACAGAATCATACAGgtataaacaa ... atgcttccagTTTGTATAACCTTGTCTCAACTGTAATGCTCTCAACTTTGGAGGATGGGAC
gcagtataatgaaactagttataacattgacacctttcacttataatgcttccagTTTGTATAACCTTGTCTCAACTGTAATGCTCTCAACTTTGGAGGATGGGACTATTGTAAAAGGCCTTGCTGGAATTCCTTCAGAGGGGCCTGTTTTGTTT
tgcttcc CT-rich tract
ttataacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataaacaaggttaatttgatcatataagccatcaattgcaatcgacaagagacttcatagtatatatatattgattaactgattgcagtataatgaaactagttataacattgacacctttcacttataatgcttccagTTTGTATAACCTTGTCTCAACTGTAATGCTCTCAACTTTGGAGGATGGGACTATTGTAAAAGGCCTTGCTGGAATTCCTTCAGAGGGGCCTGTTTTGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA