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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgatttaaggcttcatttcatgttcttattatcctcatatcactgttgtaattgtgtaataatgtctgctttgaatcagtgggtgatagatagctcattattggtattatgtaacttctgttgttcaatttgaggatgttgttttaaattcagGGAAAGAAACAACAAAGCCTTTCGCACAGTCCAAAGACTACAACAGCTGGATTTTCCATCCCTACCTGTCAAGGCTCGCCGTCCGAAACAACCGGTGTGA

Basic information

species Glycine max
transcript GLYMA16G04300.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193395169|gb|FK360854.1|FK360854
EST:     CTCCTCCCCAACCTTCTCGGCCATCGTTAAGGCACATCCAAATGCAACAG                         GGAAAGAA-CAACAAA
genomic: CTCCTCCCCAACCTTCTCGGCCATCGTTAAGGCACATCCAAATGCAACAGgtttgtgatt ... ttaaattcagGGAAAGAAACAACAAA
EST: gi|193676084|gb|FK620070.1|FK620070
EST:     CTCCTCCCCAACCTTCTCGGCCATCGTTAAGGCACATCCAAATGCAACAG                         GGAAAGAAACAACAAAGCCTTTCGCACAGTCCAAAGACTACAACAGCTGGA
genomic: CTCCTCCCCAACCTTCTCGGCCATCGTTAAGGCACATCCAAATGCAACAGgtttgtgatt ... ttaaattcagGGAAAGAAACAACAAAGCCTTTCGCACAGTCCAAAGACTACAACAGCTGGA
EST: gi|193557891|gb|FK513688.1|FK513688
EST:     CTCCTCCCCAACCTTCTCGGCCATCGTTAAGGCACATCCAAATGCAACAG                         GGAAAGAAACAACAAAGCCTTTCGCACA
genomic: CTCCTCCCCAACCTTCTCGGCCATCGTTAAGGCACATCCAAATGCAACAGgtttgtgatt ... ttaaattcagGGAAAGAAACAACAAAGCCTTTCGCACA
EST: gi|13240275|gb|BG359584.1|BG359584
EST:     CTCCTCCCCAACCTTCTCGGCCATCGTTAAGGCACATCCAAATGCAACAG                         GGAAAGAAACAACAAAGCCTTTCGCACAGTCCAAAGACTACAACAGCTGGA
genomic: CTCCTCCCCAACCTTCTCGGCCATCGTTAAGGCACATCCAAATGCAACAGgtttgtgatt ... ttaaattcagGGAAAGAAACAACAAAGCCTTTCGCACAGTCCAAAGACTACAACAGCTGGA
EST: gi|207749127|gb|GD720531.1|GD720531
EST:     CTCCTCCCCAACCTTCTCGGCCATCGTTAAGGCACATCCAAATGCAACAG                         GGAAAGAAACAACAAAGCCTTTCGCACAGTCCAAAGACTACAACAGCTGGA
genomic: CTCCTCCCCAACCTTCTCGGCCATCGTTAAGGCACATCCAAATGCAACAGgtttgtgatt ... ttaaattcagGGAAAGAAACAACAAAGCCTTTCGCACAGTCCAAAGACTACAACAGCTGGA
EST: gi|192297357|gb|FG990663.1|FG990663
EST:     CTCCTCCCCAACCTTCTCGGCCATCGTTAAGGCACATCCAAATGCAACAG                         GGAAAGAAACAACAAAGCCTTTCGCACAGTCCAAAGACTACAACAGCTGGA
genomic: CTCCTCCCCAACCTTCTCGGCCATCGTTAAGGCACATCCAAATGCAACAGgtttgtgatt ... ttaaattcagGGAAAGAAACAACAAAGCCTTTCGCACAGTCCAAAGACTACAACAGCTGGA
EST: gi|208070739|gb|GD869232.1|GD869232
EST:     CTCCTCCCCAACCTTCTCGGCCATCGTTAAGGCACATCCAAATGCAACAG                         GGAAAGAAACAACAAAGCCTTTCGCACAGTCCAAAGACTACAACAGCTGGA
genomic: CTCCTCCCCAACCTTCTCGGCCATCGTTAAGGCACATCCAAATGCAACAGgtttgtgatt ... ttaaattcagGGAAAGAAACAACAAAGCCTTTCGCACAGTCCAAAGACTACAACAGCTGGA
EST: gi|51337517|gb|CO981383.1|CO981383
EST:     CTCCTCCCCAACCTTCTCGGCCATCGTTAAGGCACATCCAAATGCAACAG                         GGAAAGAAACAACAAAGCCTTTCGCACAGTCCAAAGACTACAACAGCTGGA
genomic: CTCCTCCCCAACCTTCTCGGCCATCGTTAAGGCACATCCAAATGCAACAGgtttgtgatt ... ttaaattcagGGAAAGAAACAACAAAGCCTTTCGCACAGTCCAAAGACTACAACAGCTGGA
EST: gi|193688616|gb|FK629609.1|FK629609
EST:     CTCCTCCCCAACCTTCTCGGCCATCGTTAAGGCACATCCAAATGCAACAG                         GGAAAGAAACAACAAA
genomic: CTCCTCCCCAACCTTCTCGGCCATCGTTAAGGCACATCCAAATGCAACAGgtttgtgatt ... ttaaattcagGGAAAGAAACAACAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattggtattatgtaacttctgttgttcaatttgaggatgttgttttaaattcagGGAAAGAAACAACAAAGCCTTTCGCACAGTCCAAAGACTACAACAGCTGGATTTTCCATCCCTACCTGTCAAGGCTCGCCGTCCGAAACAACCGGTGTGA
          atgtaac  putative branch site (score: 3)
                                        ttgtttt  putative PPT
                                     atgttgttttaaatt  TA-rich tract