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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttcttaacatgttctggcattttcttagttatttttttagtttggacaaaaagaaagcattaatttgggacgtaaagtatgaactctttttattattcctattgtattgctaatgttaaaaacagACAGGGAGGAAACCTAGCGGACTATGCGGTGCAGCATTATACATATCTGCTCTTGCTCATGGTATTAAGTGCTCTAAGCCGGATATT

Basic information

species Glycine max
transcript GLYMA16G03970.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G03970.1 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G096389_T05 (Zea mays), 3'ss of exon 7
gtttcttaacatgttctggcattttcttagttatttttttagtttggacaaaaagaaagcattaatttgggacgtaaagtatgaactctttttattattcctattgtattgctaatgttaaaaacagACAGGGAGGAAACCTAGCGGACTATGCGGTGCAGCATTATACATATCTGCTCTTGCTCATGGTATTAAGTGCTCTAAGCCGGATATT
                  |||  |  ||  |  || ||||    |  | ||          ||  |||    |  || |     | |   |||| |   |||  | |||       |||     ||||| |||||||| || |||||| |||| |||||||||||||||||  |||| ||  |||||||   ||| | | | ||| | ||||||
------------------gcaggtgtttcctctttcttttgtccttcataa--------tttttcttt----cacaaggctgtgattggctttactgc-cctgctctat-------gttc----cagACTGGGAGGAAGCCAAGCGGATTATGTGGTGCAGCATTATACATTGCTGCACTCTCTCATGGGTGTAATTACACCAAGGCAGATATT

upper sequence: GLYMA16G03970.1 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G109651_T03 (Zea mays), 3'ss of exon 9
gtttcttaacatgttctggcattttcttagttatttttttagtttggacaaaaagaaagcattaatttgggacgtaaagtatgaactctttttattattcctattgtattgcta-atgttaaaaacagACAGGGAGGAAACCTAGCGGACTATGCGGTGCAGCATTATACATATCTGCTCTTGCTCATGGTATTAAGTGCTCTAAGCCGGATATT
               | | |||||  |   |  ||||| |    |                ||  | |   |||           |||   ||      | || ||  |||||  |||||     ||||| ||||||||||| || ||| |||| |||||||||||||||||  |||| ||  |||||||   ||| | | | ||| | ||||||
--------------gcagacatttcttctttcgtttttcttccata-------------ttttgttctttcacg--------aggctccgattgg----cttactgccttgctctatgttg----cagACTGGGAGGAAACCAAGTGGATTATGTGGTGCAGCATTATACATTGCTGCACTCTCTCATGGGTGTAATTACACCAAGGCAGATATT

upper sequence: GLYMA16G03970.1 (Glycine max), 3'ss of exon 9
lower sequence: AT3G09360.1 (Arabidopsis thaliana), 3'ss of exon 9
gtttcttaacatgttctggcattttctta-gttatttttttagtttggacaaaaagaaagcattaatttgggacgtaaagtatgaactctttttattattcctattgtattgctaatgttaaaaacagACAGGGAGGAAACCTAGCGGACTATGCGGTGCAGCATTATACATATCTGCTCTTGCTCATGGTATTAAGTGCTCTAAGCCGGATATT
                ||  | ||| ||| |||| | | |   ||   |   |      || |||   |      |||| |||||  | | || ||  |  |||  ||||||      ||     ||||| ||  |||| ||||| ||| |||| || |||||| | |||| | |||||||| |||||||||| |||||||||||| | ||||||
---------------gtgtgactttgttatgttagtgtatcgtttcctatgtacgctttgccttagagttaa--ttaaattatgagttatgttaatattagctac-gtattggc----ttg----cagACCGGCCGGAAGCCTAGTGGAATATGTGGAGCAGCACTTTACACAGCTGCTCTTTCTCATGGTATCAAGTGCTCTAAGACAGATATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtaaagtatgaactctttttattattcctattgtattgctaatgttaaaaacagACAGGGAGGAAACCTAGCGGACTATGCGGTGCAGCATTATACATATCTGCTCTTGCTCATGGTATTAAGTGCTCTAAGCCGGATATT
                                     tgctaat  putative branch site (score: 2)
                tttttattattcctat  TA-rich tract