Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgtgtgtgcttgtattttctgtaatagttgtgctttctattcagaacttataatgagtggcttctgatttcaatctgatgcaatgatgtactggatgtttgcagTCCGGTAAAGGTCGAAGACCAGGGAGAGATGATGTCGATGCTCCTTCTCGTCTTCCACTGCTTAATAATGGTTACTATCGAGATTTACTTGGTGAATATG

Basic information

species Glycine max
transcript GLYMA16G03340.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G03340.1 (Glycine max), 3'ss of exon 9
lower sequence: LOC_Os01g43380.1 (Oryza sativa), 3'ss of exon 4
gtaagttgtgtgtgcttgtattttctgtaatagttgtgctttctattcagaacttataatgagtggcttctgatttcaatctgatgcaatgatgtactggatgtttg--cagTCCGGTAAAGGTCGAAGACCAGGGAGAGATGATGTCGATGCTCCTTCTCGTCTTCCACTGCTTAATAATGGTTACTATCGAGATTTACTTGGTGAATATG
|||| |  ||    | | ||| |        |  | |       ||| |    ||  ||  | |  |   ||| ||  || |||| |||||| ||  |   | ||||   ||||    ||||||||||| || ||   ||||||  | |||||| ||||||||||||||||||| || ||||| |||||  ||||| | |||||||||| ||
gtaattgatgaa-acatatatatggctagccaaatata------attgactgtttccaaatatt--ccaatgacttacat-tgat-caatgaagt-ttatttttttgattagTCTTCAAAAGGTCGAAGGCCTGGCGCAGATGACATTGATGCTTCTTCTCGTCTTCCACTGCTGAACAATGGGTACTACAGAGATATTCTTGGTGAATTTG

upper sequence: GLYMA16G03340.1 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G053047_T02 (Zea mays), 3'ss of exon 10
gtaagttgtgtgtgcttgtattttctgtaatagttgtgctttctatt-cagaacttataatgagtggcttctgatttcaatctgatgc-aatgatgtactggatgtttgc-agTCCGGTAAAGGTCGAAGACCAGGGAGAGATGATGTCGATGCTCCTTCTCGTCTTCCACTGCTTAATAATGGTTACTATCGAGATTTACTTGGTGAATATG
        | |  | ||  ||||| |    || | |    |   ||  |  | | || ||  | |   || ||||       | |||   || || ||||     ||    ||||    |||||||||||||||||    || ||| | |||||| |||||||||||||||| || ||||||| ||||||  ||||| | |||||||||| ||
--------tttcggtttaaattttgttggttactagctaatggcataacttagcctagaa-aaatatattatgat----ggataatgttgataatttacttctctttcattagTCTTCAAAAGGTCGAAGACCAGGAGCGGACGATATTGATGCTTCTTCTCGTCTTCCACTTCTCAATAATGTTTACTACAGAGATATTCTTGGTGAATTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19269316|gb|BM885572.1|BM885572
EST:     GATCCTGGTCTTTTCTACATCAAAAATCTCTTTATCGAGGAATTGGCCTG                         TCCGGTAAAGGTCGAAGACCACGGAGAGATGATGTCGATGCTCCTTCTCGT
genomic: GATCCTGGTCTTTTCTACATCAAAAATCTCTTTATCGAGGAATTGGCCTGgtaagttgtg ... atgtttgcagTCCGGTAAAGGTCGAAGACCAGGGAGAGATGATGTCGATGCTCCTTCTCGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataatgagtggcttctgatttcaatctgatgcaatgatgtactggatgtttgcagTCCGGTAAAGGTCGAAGACCAGGGAGAGATGATGTCGATGCTCCTTCTCGTCTTCCACTGCTTAATAATGGTTACTATCGAGATTTACTTGGTGAATATG
                 atttcaat  TA-rich tract