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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgaataatactttctgctctttgtaaaatgaaaatattcttggcaggacaatggttgacagtaattttttacagATACTGTTCGTAAGGAAGCTGCAACAATCACGGCCGTATTCCCTTCACCAAGTGAAGTTATGTCAATTTTAGTTCAG

Basic information

species Glycine max
transcript GLYMA16G01660.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207812003|gb|GD783588.1|GD783588
EST:     CTTTCCTCCTTGTACAAAGAAATCACAG                         ATACTGTTCGTAAGGAAGCTGCAACAATCACGGCCGTATTCCCTTCACCAA
genomic: CTTTCCTCCTTGTACAAAGAAATCACAGgtttgaataa ... ttttttacagATACTGTTCGTAAGGAAGCTGCAACAATCACGGCCGTATTCCCTTCACCAA
EST: gi|193491513|gb|FK453111.1|FK453111
EST:     TCCAAGTAATGTTGCTCGTGGGCTTTCCTCCTTGTACAAAGAAATCACAG                         ATACTGTTCGTAAAGAGGCTGCAACAATCACGGCTGTATTCCCTTCACCAA
genomic: TCCTAGTAATGTTGCTCGTGGGCTTTCCTCCTTGTACAAAGAAATCACAGgtttgaataa ... ttttttacagATACTGTTCGTAAGGAAGCTGCAACAATCACGGCCGTATTCCCTTCACCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtaaaatgaaaatattcttggcaggacaatggttgacagtaattttttacagATACTGTTCGTAAGGAAGCTGCAACAATCACGGCCGTATTCCCTTCACCAAGTGAAGTTATGTCAATTTTAGTTCAG
                                 ggttgac  putative branch site (score: 4)
                                             ttttttac  putative PPT
     aaaatgaaaatattct  TA-rich tract