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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcaatatttgcaatattttgatcttaaaatttggttttatgatagtgtacctaatttctggttgttacagGTGGTCAATCGGGCAGAGCTTTTATTCTCTGAGGTACTCAATGGTCTTAGTCAAATTGTTGAGAAAAGATCTAATGCAGTCCAAGTCAGTAATGGCCACA

Basic information

species Glycine max
transcript GLYMA16G01590.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18040973|gb|BM309267.1|BM309267
EST:     TTATATTTGATTATGGGAATCAGGACTGGATACAACAAGAATCTGATGAG                         GTGGTCAATCGGGCAGAGCTTTTATTCTCTGAGGTACTCAATGGTCTTAGT
genomic: TTATATTTGATTATGGGAATCAGGACTGGATACAACAAGAATCTGATGAGgttcaatatt ... gttgttacagGTGGTCAATCGGGCAGAGCTTTTATTCTCTGAGGTACTCAATGGTCTTAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgatcttaaaatttggttttatgatagtgtacctaatttctggttgttacagGTGGTCAATCGGGCAGAGCTTTTATTCTCTGAGGTACTCAATGGTCTTAGTCAAATTGTTGAGAAAAGATCTAATGCAGTCCAAGTCAGTAATGGCCACA
                                 acctaat  putative branch site (score: 3)
        ttaaaatttggtttta  TA-rich tract