1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatggttattgttattatgaaaattatattgtaatctgtttctcttctactcattaatacagaaaattattcatcataattgtttccgtacacattgcatgcagGTGATAATTTAATTGTGGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGACATGGACCTTTCATCTAAACCATATAAAATTCTTAA
species | Glycine max |
transcript | GLYMA16G00540.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCTTGATACTGGGCTTCGTGAAGCTTCATCCATTGCAGTTCATCCTGGAG GTGATAATTTAATTGTGGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGACAEST: gi|7686391|gb|AW757039.1|AW757039
genomic: GCTTGATACTGGGCTTCGTGAAGCTTCATCCATTGCAGTTCATCCTGGAGgtatggttat ... ttgcatgcagGTGATAATTTAATTGTGGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGACA
EST: CTTGATACTGGGCTTCGTGAAGCTTCATCCATTGCAGTTCATTCCTGGAA GTGATAATTTAATTTGTGGGTAGCCAAGAAAGGAAGATGTGTTGGTTTGA
genomic: CTTGATACTGGGCTTCGTGAAGCTTCATCCATTGCAGTTCAT-CCTGGAGgtatggttat ... ttgcatgcagGTGATAATTTAATT-GTGGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGA
ctcattaatacagaaaattattcatcataattgtttccgtacacattgcatgcagGTGATAATTTAATTGTGGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGACATGGACCTTTCATCTAAACCATATAAAATTCTTAA
cattaat putative branch site (score: 3)
taatacagaaaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggttattgttattatgaaaattatattgtaatctgtttctcttctactcattaatacagaaaattattcatcataattgtttccgtacacattgcatgcagGTGATAATTTAATTGTGGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGACATGGACCTTTCATCTAAACCATATAAAATTCTTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA