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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatattccctaatccctgttaacttcttggcttacttagtccatatggtatttttgcttgatattgacaatttcttattgatagcaccgacatgcatgttttacagGTTTATCCGGATTTAGAAGTAGCTTTTGTCATTTCGGAAGAAGAATCCCTCTTGAACGCCTTGTCCAAAACTGTTGAATTACTAGAAGGCAATACTGCAT

Basic information

species Glycine max
transcript GLYMA16G00210.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G00210.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv12s0035g02060.t01 (Vitis vinifera), 3'ss of exon 2
------------------------------------------------------------------------gtaat--attccctaatccctgttaacttcttggcttacttagtccatatggtatttttgcttgatattgacaatttcttattgatagcaccgaca----tgcatgttttacagGTTTATCCGGATTTAGAAGTAGCTTTTGTCATTTCGGAAGAAGAATCCCTCTTGAACGCCTTGTCCAAAACTGTTGAATTACTAGAAGGCAATACTGCAT
                                                                         ||||  |      | || |   |   | |   | ||   |  |   | || ||  || | ||| | |      || ||| ||  ||  |  || |    |  |   ||| ||||||||| | ||| ||||||||||||||||  |||| ||||| ||| || |||| || || ||||||||||| || |||||||| ||||| ||||||||| 
gtacttatttgttttgatattataaatgtactgagtcagaatgttagaagtagtggctatttttcttttcatttaatcaaacaaggagtcacaaattgatcccaagattgtcttataagt-tgataccttagtttgttgtatttttttcctttttcttattattgatagctttatactctttccagGTTTATACAGATCTAGAAGTAGCTTTTGTTGTTTCAGAAGAGGAAGCCATCTTTAAGGCATTGTCCAAAACCGTGGAATTACTGGAAGGGAATACTGCAC

upper sequence: GLYMA16G00210.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv12s0035g01920.t01 (Vitis vinifera), 3'ss of exon 10
------------------------------------------------------------------------gtaat--attccctaatccctgttaacttcttggcttacttagtccatatggtatttttgcttgatattgacaatttcttattgatagcaccgacatgcatgt----tttacagGTTTATCCGGATTTAGAAGTAGCTTTTGTCATTTCGGAAGAAGAATCCCTCTTGAACGCCTTGTCCAAAACTGTTGAATTACTAGAAGGCAATACTGCAT
                                                                         ||||  |      | || |   |   | |   | ||   |   | |  || ||  || | ||| | |    | || ||| |   ||  |  || |   |  |    ||| ||||||||| | ||| |||||||||||||||||||||| ||||| ||  || |||| || ||  |||||||||| || |||||||| ||||| ||||||||| 
gtatttattcattttggtattataaacataccgagtcagaatgttagaagtactgaccatttttcttttcatttaatcaaacaaggagtcacaaattgatcccaagattgtctta-caagttgataccttagtttgttgtatttatttccttttccttattattgatagctaaatactctttccagGTTTATTCAGATCTAGAAGTAGCTTTTGTCATTTCAGAAGAGGAGGCCATCTTTAAGGCACTGTCCAAAACCGTGGAATTACTGGAAGGGAATACTGCAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgcttgatattgacaatttcttattgatagcaccgacatgcatgttttacagGTTTATCCGGATTTAGAAGTAGCTTTTGTCATTTCGGAAGAAGAATCCCTCTTGAACGCCTTGTCCAAAACTGTTGAATTACTAGAAGGCAATACTGCAT
                 aatttcttattgata  TA-rich tract