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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctcatgacttaaccatcattgatatgctgaattgttagctgtctctactatatgtagcttagtttgtaaggcctgtgcacctgaaaggtgataaattccttctcttgcttgactattgcagGTGGAAGTGGTGTGCCTCCTGGTACAAGACCTGAAACCTGTAAGCGCTGTAAAGGGTCAGGAGTG

Basic information

species Glycine max
transcript GLYMA15G42640.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17518777|gb|BM187819.1|BM187819
EST:     ACATTTCAAACAGAAGTGCTTTGTAACACCTGTG                         GTGGAAGTGGTGTGCCTCCTGGTACAAGACCTGAAACCTGTAAGCGCTGTA
genomic: ACATTTCAAACAGAAGTGCTTTGTAACACCTGTGgtatgctcat ... actattgcagGTGGAAGTGGTGTGCCTCCTGGTACAAGACCTGAAACCTGTAAGCGCTGTA
EST: gi|58018599|gb|CX705341.1|CX705341
EST:     ATGCAATAAAACTATTACATTTCAAACAGAAGTGCTTTGTAACACCTGTG                         GTGGAAGTGGTGTGCCTCCTGGTACAATACCTGAAACCTGTAAGCGCTGTA
genomic: ATGCAATAAAACTATTACATTTCAAACAGAAGTGCTTTGTAACACCTGTGgtatgctcat ... actattgcagGTGGAAGTGGTGTGCCTCCTGGTACAAGACCTGAAACCTGTAAGCGCTGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaggcctgtgcacctgaaaggtgataaattccttctcttgcttgactattgcagGTGGAAGTGGTGTGCCTCCTGGTACAAGACCTGAAACCTGTAAGCGCTGTAAAGGGTCAGGAGTG
                                        gcttgac  putative branch site (score: 4)
                      tgataaatt  TA-rich tract