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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgaaactcatagtaaactgttttgattgcctaacatttatatttcttatgtttttgtaaatagcaacaaatgattcacaatcaatttgttacattttcagGTGCAGAGTGAGTTTCAGAAGGCATATGAGGGTGGGATAGCTAAGGCAAG

Basic information

species Glycine max
transcript GLYMA15G42300.2
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G42300.1 (Glycine max), 3'ss of exon 9
lower sequence: AT2G44350.2 (Arabidopsis thaliana), 3'ss of exon 9
----------tgaaactcatagtaaa----ctgttttgattgc--ctaacatttatatttcttatgtttttgtaaatagcaacaaatgattcacaatcaa---------tttgttac---attttcagGTGCAGAGTGAGTTTCAGAAGGCATATGAGGGTGGGATAGCTAAGGCAAG
            |||||| || |       ||||| |  |||     | | ||   |  |  |   ||||| |   ||  |  |||  |||  ||    |         ||  ||||   || | |||||||| ||||||||||| ||||||||||||  ||| ||   |||| ||| 
gtgtggttctctaaactcgtattgttgtttctgttcttcttgtgataagcgttggaaacttattgttttttttggctataagtaaacaattttcagcagaatgataattttctttacctaatatccagGTGCAAAGTGAGTTTCAAAAGGCATATGAGAATGGAATTCATAAGTCAAA

upper sequence: GLYMA15G42300.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv13s0156g00180.t01 (Vitis vinifera), 3'ss of exon 9
-----tgaaact-catagtaaactgttttgattgcctaacatttatatttcttatgtttttgtaaatagcaacaaatgattcacaatcaatttgttacattttcagGTGCAGAGTGAGTTTCAGAAGGCATATGAGGGTGGGATAGCTAAGGCAAG
     ||||    || |  || || ||  |  |||   |  |||  ||      | |   |||  ||   |||||   |||||    |  ||| ||  |||| ||||| |||||||| ||||||||||||||||||   |||||  | ||  ||| 
caaagtgaagggacacatcaagctattgggtatgc---aggttttgatgagcagtttagatgttgattttaacaat--attcaatcactttttattgtattt-cagGTTCAGAGTGAATTTCAGAAGGCATATGAGAAGGGGATTCCAAAATCAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151410306|gb|EV280121.1|EV280121
EST:     TTTCTGCTCATCCAATGACTCAATTCACAACTGGTGTCATGGCCCTTCAG                         -TGCAGAGTGAGTTTCAGAAGGCATATGAGGGTGGGGATAGCTAAGGCAAG
genomic: TTTCTGCTCATCCAATGACTCAATTCACAACTGGTGTCATGGCCCTTCAGgttgagtaac ... acattttcagGTGCAGAGTGAGTTTCAGAAGGCATATGAGGGTGGG-ATAGCTAAGGCAAG
EST: gi|151408594|gb|EV278402.1|EV278402
EST:     TTTCTGCTCATCCAATGACTCAATTCACAACTGGTGTCATGGCCCTTCAG                         GTGCAGAGTGAGTTTCAGAAGGCATATGAGGGTGGGATAGCTAAGGCAAG
genomic: TTTCTGCTCATCCAATGACTCAATTCACAACTGGTGTCATGGCCCTTCAGgttgagtaac ... acattttcagGTGCAGAGTGAGTTTCAGAAGGCATATGAGGGTGGGATAGCTAAGGCAAG
EST: gi|254317135|gb|GR826080.1|GR826080
EST:     TTTCTGCTCATCCAATGACTCAATTCACAACTGGTGTCATGGCCCTTCAG                         GTGCAGAGTGAGTTTCAGAAGGCATATGAGGGTGGGATAGCTAAGGCAAG
genomic: TTTCTGCTCATCCAATGACTCAATTCACAACTGGTGTCATGGCCCTTCAGgttgagtaac ... acattttcagGTGCAGAGTGAGTTTCAGAAGGCATATGAGGGTGGGATAGCTAAGGCAAG
EST: gi|192324396|gb|FK015747.1|FK015747
EST:     TTTCTGCTCATCCAATGACTCAATTCACAACTGGTGTCATGGCCCTTCAG                         GTGCAGAGTGAGTTTCAGAAGGTATATGAGGGGTGGGATAGCTAAGGCAAG
genomic: TTTCTGCTCATCCAATGACTCAATTCACAACTGGTGTCATGGCCCTTCAGgttgagtaac ... acattttcagGTGCAGAGTGAGTTTCAGAAGGCATATGAGGG-TGGGATAGCTAAGGCAAG
EST: gi|213591664|gb|DB969764.1|DB969764
EST:     TTTCTGCTCATCCAATGACTCAATTCACAACTGGTGTCATGGCCCTTCAG                         GTGCAGAGTGAGTT
genomic: TTTCTGCTCATCCAATGACTCAATTCACAACTGGTGTCATGGCCCTTCAGgttgagtaac ... acattttcagGTGCAGAGTGAGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatgtttttgtaaatagcaacaaatgattcacaatcaatttgttacattttcagGTGCAGAGTGAGTTTCAGAAGGCATATGAGGGTGGGATAGCTAAGGCAAG
                                              cattttc  CT-rich tract
                                     aatttgttacatttt  TA-rich tract