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...ccaaacattctaagagtgtgtgaaaatagcttatgaaattgcatgctactttgaaacatgatatagtgattctttaatctctatgacaatctctttgcagTGTGCAACTTCAAATCCTGATGGCCAAAAGCGAGCCCTTGTGGTAGGTGGAGGAATAGCTAACTTTACTGATGTTGCTGCTACATTCAGCGGCATAATTC
species | Glycine max |
transcript | GLYMA15G42140.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GTGCACCCAAGGAAGATGAGGTCTTGCAGTATGCCAGAGTAGTGATTGAT TGTGCAACTTCAAATCCTGATGGCCAAAAGCGAGCCCTTGTGGTAGGTGGAEST: gi|7924163|gb|AW830189.1|AW830189
genomic: GTGCACCCAAGGAAGATGAGGTCTTGCAGTATGCCAGAGTAGTGATTGATgtaatcaatt ... ctctttgcagTGTGCAACTTCAAATCCTGATGGCCAAAAGCGAGCCCTTGTGGTAGGTGGA
EST: GTGCACCCAAGGAAGATGAGGTCTTGCAGTATGCCAGAGTAGTGATTGAT TGTGCAACTTCAAATCCTGATGGCCAAAAGCGAGCCCTTGTGGTAGGTGGAEST: gi|6502280|gb|AW203653.1|AW203653
genomic: GTGCACCCAAGGAAGATGAGGTCTTGCAGTATGCCAGAGTAGTGATTGATgtaatcaatt ... ctctttgcagTGTGCAACTTCAAATCCTGATGGCCAAAAGCGAGCCCTTGTGGTAGGTGGA
EST: GTGCACCCAAGGAAGATGAGGTCTTGCAGTATGCCAGAGTAGTGATTGAT TGTGCAACTTCAAATCCTGATGGCCAAAAGCGAGCCCTTGTGGTAGGTGGAEST: gi|6726078|gb|AW310477.1|AW310477
genomic: GTGCACCCAAGGAAGATGAGGTCTTGCAGTATGCCAGAGTAGTGATTGATgtaatcaatt ... ctctttgcagTGTGCAACTTCAAATCCTGATGGCCAAAAGCGAGCCCTTGTGGTAGGTGGA
EST: TGCACCC-AGGNAAGATGAGGTCTTGCAGTATGCCAGAGTAGTGATTGAT TGTGCAACTTCAAATCCTGATGGCC-AAAGCGAGCCCCTTGTGGTAGGTGGEST: gi|192330363|gb|FK021164.1|FK021164
genomic: TGCACCCAAGG-AAGATGAGGTCTTGCAGTATGCCAGAGTAGTGATTGATgtaatcaatt ... ctctttgcagTGTGCAACTTCAAATCCTGATGGCCAAAAGCGAG-CCCTTGTGGTAGGTGG
EST: GTGCACCCAAGGAAGATGAGGTCTTGCAGTATGCCAGAGTAGTGATTGAT TGTGTAACTTCAAATCCTGATGGCCAAAAGCGAGCCCTTGTGGTAGGTGGAEST: gi|10253168|gb|BE820934.1|BE820934
genomic: GTGCACCCAAGGAAGATGAGGTCTTGCAGTATGCCAGAGTAGTGATTGATgtaatcaatt ... ctctttgcagTGTGCAACTTCAAATCCTGATGGCCAAAAGCGAGCCCTTGTGGTAGGTGGA
EST: GTGCACCCAAGGAAGATGANNNCTTGCAGTATGCCAGAGTAGTGATTGAT TGTGCAACTTCAAATCCTGATGGCCAAAAGCGAGCCCTTGTGGTAGGTNNN
genomic: GTGCACCCAAGGAAGATGAGGTCTTGCAGTATGCCAGAGTAGTGATTGATgtaatcaatt ... ctctttgcagTGTGCAACTTCAAATCCTGATGGCCAAAAGCGAGCCCTTGTGGTAGGTGGA
ctactttgaaacatgatatagtgattctttaatctctatgacaatctctttgcagTGTGCAACTTCAAATCCTGATGGCCAAAAGCGAGCCCTTGTGGTAGGTGGAGGAATAGCTAACTTTACTGATGTTGCTGCTACATTCAGCGGCATAATTC
ctttaat putative branch site (score: 4)
tctctttgc putative PPT
attctttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccaaacattctaagagtgtgtgaaaatagcttatgaaattgcatgctactttgaaacatgatatagtgattctttaatctctatgacaatctctttgcagTGTGCAACTTCAAATCCTGATGGCCAAAAGCGAGCCCTTGTGGTAGGTGGAGGAATAGCTAACTTTACTGATGTTGCTGCTACATTCAGCGGCATAATTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
ccaaaca
- - - - - - - -gtgtgtg
- - - - - - - - - - - - - - gcttatg
- - - - - - - - - - - - - - - - - - - - gcatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - catgata