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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgattaactctaaagtgttcattaaccatagatttttcttattggattcttagataacatattgattgtttataatctgcagATACACCTCTAAAATGTTATTAGCTGCCATTGATGAAAATCACAGGGGTACTTATGATTTTCTCTACTTGCCAATTGACTTTAAG

Basic information

species Glycine max
transcript GLYMA15G23420.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G23420.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv10s0003g02670.t01 (Vitis vinifera), 3'ss of exon 9
-------------gtatgattaactctaaagtgttcattaacca-tagattttt--cttattggattcttagataacatattgattgtttataatctgc------agATACACCTCTAAAATGTTATTAGCTGCCATTGATGAAAATCACAGGGGTACTTATGATTTTCTCTACTTGCCAATTGACTTTAAG
              ||| ||    | | |  |||  |||||| | ||||| |||   |||||||| |||||   |  | |||   |  |||   | | |      || |||||||| || |||||  ||||||| ||||||||| |||||||||||||||||||||| || ||  |||| ||||||||||||
gtatgagcaacctttataatcg-ttgttatttgtgaattaacaactagatatttagtttattggaatcttaatcatgaaattatcttcttaatttgtcccattcaagGTACACCTCAAAGATGTTGCTAGCTGCTATTGATGAATATCACAGGGGTACTTATGATTTCCTTTATCTGCCGATTGACTTTAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208177087|gb|GD979924.1|GD979924
EST:     AGTGGTGAAGATACAAGGACTACATTAATGATAAAGAATATCCCGAACAA                         ATACACCTCTAAAATGTTATTAGCTGCCATTGATGAAAATCACAGGGGTAC
genomic: AGTGGTGAAGATACAAGGACTACATTAATGATAAAGAATATCCCGAACAAgtatgattaa ... taatctgcagATACACCTCTAAAATGTTATTAGCTGCCATTGATGAAAATCACAGGGGTAC
EST: gi|4313318|gb|AI460437.1|AI460437
EST:     AGTGGTGAAGATACAAGGACTACATTAATGATAAAGAATATCCCGAACAN                         ATACACCTCTAAAATGTTATTAGCTGCCATTGATGAAAATCACAGGGGTAC
genomic: AGTGGTGAAGATACAAGGACTACATTAATGATAAAGAATATCCCGAACAAgtatgattaa ... taatctgcagATACACCTCTAAAATGTTATTAGCTGCCATTGATGAAAATCACAGGGGTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atagatttttcttattggattcttagataacatattgattgtttataatctgcagATACACCTCTAAAATGTTATTAGCTGCCATTGATGAAAATCACAGGGGTACTTATGATTTTCTCTACTTGCCAATTGACTTTAAG
                                tattgat  putative branch site (score: 3)
                      ttagataacatattga  TA-rich tract