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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcaattacccaaaactttgcatttagtcttatggttttataacaaacttatgttttttttatcaaacattatcaattatacttcacttttgtggtttcttatttgtttgtgattattatacacagGTCGCATCATGAAAAACTAGTCATTATTGATAATCATATTTGCTTTATTGGTGGACTGGATTTATGCTTTGGTCGTTATGACACATCTGAGCATAAAGTG

Basic information

species Glycine max
transcript GLYMA15G16270.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G16270.1 (Glycine max), 3'ss of exon 9
lower sequence: LOC_Os01g20860.1 (Oryza sativa), 3'ss of exon 7
gtatgcaattacccaaaactttgcatttagtcttatggttttataacaaacttatgttttttttatcaaacattatcaattatacttcacttttgtggtttcttatttgtttgtgattattatacacagGTCGCATCATGAAAAACTAGTCATTATTGATAATCATATTTGCTTTATTGGTGGACTGGATTTATGCTTTGGTCGTTATGACACATCTGAGCATAAAGTG
                                     ||    | | ||  |||   |  |||      ||| |||      | || || ||   | | | |||||  ||| |  |||    |  |  |||| |||||||| ||| | || ||| ||||||||||  | |||| |||||| || || ||||||||||||||||||||||| ||  ||||||||||||| 
-------------------------------------gtacggtgagaactttacactcattt------acactat------ttctgcagttaattagatccttatg-gttggctattgccttgaa--gGTCACATCATGAGAAAATCGTTATTGTTGATAATCAAGTATGCTATATTGGAGGCCTTGATTTATGCTTTGGTCGTTATGATACTCCTGAGCATAAAGTT

upper sequence: GLYMA15G16270.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv05s0077g01830.t01 (Vitis vinifera), 3'ss of exon 9
gtatgcaattacccaaaactttgcatttagtcttatggttttataacaaacttatgttttttttatcaaacattatcaattatacttcacttttgtggtttcttatttgtttgtgattattatacacagGTCGCATCATGAAAAACTAGTCATTATTGATAATCATATTTGCTTTATTGGTGGACTGGATTTATGCTTTGGTCGTTATGACACATCTGAGCATAAAGTG
                   | || | ||    ||   ||  ||||   |  | |   ||    |||  |  |||  |  || || |  | |||||  ||| || || |  ||    |  ||||| ||||||| || ||||||||||| |||||| ||||| | || |||||||||||||| || |||||| |||||||||| |||||||||||||  || || ||||| 
------------------gtatgtaatttactttgaagtcctata--gatgtaagaattgagctat--agtatttcctgttgtaatgaatttttgaagttgctgatgtcatttctgt--ttatatacagGTCCCACCATGAAAAACTTGTCATTGTTGATTACCAGATTTGCTTTATTGGAGGTCTGGATCTATGCTTTGGCCGTTATGACACATTGGAACACAAAGTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcaattatacttcacttttgtggtttcttatttgtttgtgattattatacacagGTCGCATCATGAAAAACTAGTCATTATTGATAATCATATTTGCTTTATTGGTGGACTGGATTTATGCTTTGGTCGTTATGACACATCTGAGCATAAAGTG
                            ttatttgtttgtgatt  TA-rich tract