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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggattttgctgatagagtttcattattgtatagttagatgaatgtgatcctttctggtaaataatttcgaatattttcaaatttgttattaaggaatagaaatgtaaaatttatgctttggtgatgctaaattttcagGTTTGGGATATACGAAGTAAAATGCAGATTCATGCTCTTTCAGGACATGATAACACTGTCTGCTCTGTGTTTACGCGGCCGACG

Basic information

species Glycine max
transcript GLYMA15G15960.2
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G15960.1 (Glycine max), 3'ss of exon 10
lower sequence: PP1S402_49V6.1 (Physcomitrella patens), 3'ss of exon 9
gtatggattttgctgatagagtttcattattgtatagttagatgaatgtgatcc-tttctggtaaataatttcgaatattttcaa--atttgttattaaggaatagaaatgtaaaatttatgctttggtgatgctaaatttt-cagGTTTGGGATATACGAAGTAAAATGCAGATTCATGCTCTTTCAGGACATGATAACACTGTCTGCTCTGTGTTTACGCGGCCGACG
                             |   | | |  | |     |  | |  ||| | |   | ||||  |||   |  ||  ||||||| ||   |  |   |||   |  ||| |       | | |||    | | ||||| ||||| ||  |||  ||    ||| |   |||  | ||||||||||| ||||| |||||||||||| |||||| | | || 
----------------------------gtaagacattcggttcttctttcttcacttcagatggttcattttcaattgatcaaactatttgtttttttcgcgttacaatcagacgtttttagcacc-taacgctcttctctgcagGTATGGGACATTAGAACCAAGGCCCAGGTGTTTGCATTATCAGGACATGAGAACACGGTCTGCTCTGTGATTACGCAGGCAACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21993683|gb|BQ785211.1|BQ785211
EST:     ATCCCACAATTGACGTTTTACTAACCGGAGGACGTGATTCTGTCTGCCGG                         GTTTGGGATATACGAAGTAAAATGCAGATTCATGCTCTTTCAGGACATGAT
genomic: ATCCCACAATTGACGTTTTACTAACCGGAGGACGTGATTCTGTCTGCCGGgtatggattt ... aaattttcagGTTTGGGATATACGAAGTAAAATGCAGATTCATGCTCTTTCAGGACATGAT
EST: gi|37994708|gb|CF806333.1|CF806333
EST:     ATCCCACAATTGACGTTTTACTAACCGGAGGACGTGATTCTGTCTGCCGG                         GTTTGGGATATACGAAGTAAAATGCAGATTCATGCTCTTTCAGGACATGAT
genomic: ATCCCACAATTGACGTTTTACTAACCGGAGGACGTGATTCTGTCTGCCGGgtatggattt ... aaattttcagGTTTGGGATATACGAAGTAAAATGCAGATTCATGCTCTTTCAGGACATGAT
EST: gi|10254053|gb|BE821819.1|BE821819
EST:     ATCCCACAATTGACGTTTTACTAACCGGAGGACGTGATTCTGTCTGCCGG                         GTTTGGGATATACGAAGTAAAATGCAGATTCATGCTCTTTCAGGACATGAT
genomic: ATCCCACAATTGACGTTTTACTAACCGGAGGACGTGATTCTGTCTGCCGGgtatggattt ... aaattttcagGTTTGGGATATACGAAGTAAAATGCAGATTCATGCTCTTTCAGGACATGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttattaaggaatagaaatgtaaaatttatgctttggtgatgctaaattttcagGTTTGGGATATACGAAGTAAAATGCAGATTCATGCTCTTTCAGGACATGATAACACTGTCTGCTCTGTGTTTACGCGGCCGACG
                                         tgctaaa  putative branch site (score: 2)
                                                ttttc  CT-rich tract
           aatagaaatgtaaaat  TA-rich tract