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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagatttgttccaggactattttttttatgagtgcaatcctacatcagttttcatcgcttgaagtttatgcatcctttccttctttaacattttttatcatctatttgcagCTTTATAGGAAGATTATTCTGTCATGCTCTTGAAGTCTCTCGGCCAAAATCTGTTCTCGTTAACTCTCTATCTGTATGCATATCTTTGCTAGACCCCAAG

Basic information

species Glycine max
transcript GLYMA15G13580.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G13580.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv10s0003g04630.t01 (Vitis vinifera), 3'ss of exon 9
gta-gatttgttccaggactattttttttatgagtgcaatcctac-atcagttttcatcgcttgaagt-ttatgcatcctttccttctttaacattttttatcatctatttgcagCTTTATAGGAAGATTATTCTGTCATGCTCTTGAAGTCTCTCGGCCAAAATCTGTTCTCGTTAACTCTCTATCTGTATGCATATCTTTGCTAGACCCCAAG
||| || ||  |       | ||||  |  ||  || ||   | | | || ||| ||||        | ||||  |     |   |||||     ||||  |    |   ||||| |||||||||||||||||  |||||||| | || | ||| ||||| ||||||||| | ||||||||| | |||||||||||||||||  ||||||| |||
gtatgacttaattt---tttcttttcatgttgcttggaaatttgcgaacactttccatctaccaggctgttatttaataaatgtctctttg----ttttgtttgctttgatgcagTTTTATAGGAAGATTATTTCGTCATGCTTTGGAGGACTCACGGCCTAAATCTGTTTTAGTTAACTCTTTGTCTGTATGCATATCTTTATTAGACCCTAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208131154|gb|GD927261.1|GD927261
EST:     ATTACTCGATTTGCTCCTGCAGGGCTTTCTGCAAAAATCTCCAGCCCAAG                         CTTTATAGGAAG
genomic: ATTACTCGATTTGCTCCTGCAGGGCTTTCTGCAAAAATCTCCAGCCCAAGgtagatttgt ... ctatttgcagCTTTATAGGAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttgaagtttatgcatcctttccttctttaacattttttatcatctatttgcagCTTTATAGGAAGATTATTCTGTCATGCTCTTGAAGTCTCTCGGCCAAAATCTGTTCTCGTTAACTCTCTATCTGTATGCATATCTTTGCTAGACCCCAAG
                          ctttaac  putative branch site (score: 3)
                                            tctattt  putative PPT
                        ttctttaacatttttt  TA-rich tract