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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatgaaattttggaaatttttgtattgaaacttttccattttgggttctttccttatctcggatatggtgtggatcatagtgttgcacttattcacacagGTTGCTCAATTACGGCAGCGTTTCTTCCATTCTATAGCGCCTGGAGGTCTGGCTGGTGATCGGCGTGGTGTTGTGCCTGCTTCTGCCTTTTCTATTAGTG

Basic information

species Glycine max
transcript GLYMA15G13380.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G13380.2 (Glycine max), 3'ss of exon 9
lower sequence: Vv10s0116g00810.t01 (Vitis vinifera), 3'ss of exon 8
aatgaaattttggaaatttttgtattgaaacttttccattttgggttctttccttatctcggatatggtgtggatcatagtgt-tgcacttattcacacagGTTGCTCAATTACGGCAGCGTTTCTTCCATTCTATAGCGCCTGGAGGTCTGGCTGGTGATCGGCGTGGTGTTGTGCCTGCTTCTGCCTTTTCTATTAGTG
 || |    |   |||||| |   |  |     ||  || ||    |       ||    ||   | || ||  |     | | |   |||  | | ||||||||||||| |  || |||| || ||||||||||| || ||||||||||| ||||||||| | || || ||||| ||||  || |  ||||   | ||||
-atcagtggtcataaatttataggtacatttccttttatgttaatctagagttgtaagaaggtacttgtatgcttatggctatatatgctttcttatacagGTTGCTCAACTGAGGAAGCGATTTTTCCATTCTATTGCTCCTGGAGGTCTTGCTGGTGATAGACGGGGCGTTGTCCCTGGCTCAGGATTTTGCTTCAGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11689067|gb|BF596743.1|BF596743
EST:     TTACTGCTTTGTCAAGCTATGAGGACAAGGAGGACAAGTTCAAAGAGGAG                         GTTGCTCAATTACNGCAGCAGTT-CTTCCATTCTAATAGCGCCTGGAG-TC
genomic: TTACTGCTTTGTCAAGCTATGAGGACAAGGAGGACAAGTTCAAAGAGGAGgtacccattc ... attcacacagGTTGCTCAATTACGGCAGC-GTTTCTTCCATTCTA-TAGCGCCTGGAGGTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctttccttatctcggatatggtgtggatcatagtgttgcacttattcacacagGTTGCTCAATTACGGCAGCGTTTCTTCCATTCTATAGCGCCTGGAGGTCTGGCTGGTGATCGGCGTGGTGTTGTGCCTGCTTCTGCCTTTTCTATTAGTG
                                          cttattc  CT-rich tract
                                         acttatt  TA-rich tract