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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactggtttctttctttcgagattgacattgtaggaactttataatttggttgttcatgtctaaagttcaaattaaccttagcacgttatttacattatccataaaatgcagGATCCTCCTCCACTTCCATACTTGACTGAAAAAGTATCCAGAATCTATGATATTTCCCTAGAG

Basic information

species Glycine max
transcript GLYMA15G12100.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5676815|gb|AI937945.1|AI937945
EST:     TTGTGACCTTGGAAGCATTAGAACCTTTTGCTTGCGAAGCCCCAAAACAG                         GATCCTCCTCCACTTCCATACTTGACTGAAAAAGTATCCAGAATCTATGAT
genomic: TTGTGACCTTGGAAGCATTAGAACCTTTTGCTTGCGAAGCCCCAAAACAGgtaactggtt ... taaaatgcagGATCCTCCTCCACTTCCATACTTGACTGAAAAAGTATCCAGAATCTATGAT
EST: gi|58015544|gb|CX702286.1|CX702286
EST:     GCCCCAAAACAG                         GATCCTCCTCCACTTCCATACTTGACTGAAAAAGTATCCAGAATCTATGAT
genomic: GCCCCAAAACAGgtaactggtt ... taaaatgcagGATCCTCCTCCACTTCCATACTTGACTGAAAAAGTATCCAGAATCTATGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtctaaagttcaaattaaccttagcacgttatttacattatccataaaatgcagGATCCTCCTCCACTTCCATACTTGACTGAAAAAGTATCCAGAATCTATGATATTTCCCTAGAG
             aattaac  putative branch site (score: 2)
                             ttatttacattatcca  TA-rich tract