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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tagtacaatataattctcctctaatattacctatagatttaaagtatcataatgctattgtaatccaatgtacattacatttgtggctcactttctgtagGTGTTGCTGCAAGGCCCCGAAAGGTTGTTGGTTCAGTAATGCGTTACAACAACTGTGGGGTAGCAGTGACGGCCGAGGCTGAACAGCGGAGGGTGGTCAG

Basic information

species Glycine max
transcript GLYMA15G10940.2
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G10940.2 (Glycine max), 3'ss of exon 9
lower sequence: Vv05s0020g02530.t01 (Vitis vinifera), 3'ss of exon 9
tagtacaatataattctcctctaatattacctatag-atttaaagtatcataatgctattgtaatccaatgtacattacatttgtggctcactttc--tgtagGTGTTGCTGCAAGGCCCCGAAAGGTTGTTGGTTCAGTAATGCGTTACAACAACTGTGGGGTAGCAGTGACGGCCGAGGCT---GAACAGCGGAGGGTGGTCAG
   |   ||    || | |  |    | | || |   ||   |    |  | |    ||  ||||  | ||     |  | || |      ||     || ||| | ||||||||||||  |||||||||||||||||||  ||||||||||||||||||| | ||| |   | || |||| |   |||||||||||  ||||   
--ctctcatgctcttgttccttctcttgatctttgccatcctatcctttgtcaccagatcttaata-attggcttctctaattataaactgctcctagtgcagGAGGTGCTGCAAGGCCTGGAAAGGTTGTTGGTTCAGTGTTGCGTTACAACAACTGTGGAGCAGCTGCAGCAGCAGAGGTTCTTGAACAGCGGAGAATGGT---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208169113|gb|GD971778.1|GD971778
EST:     TGCTATCCCTATGTCTAGGCTTCCTTTACAAGCACCGCAAAATATTCAAG                         GTGTTGCTGCAAGGCCCCGAAAGGTTGTTGGTTCAGTAATGCGTTACAACA
genomic: TGCTATCCCTATGTCTAGGCTTCCTTTACAAGCACCGCAAAATATTCAAGgtgtgatgat ... ctttctgtagGTGTTGCTGCAAGGCCCCGAAAGGTTGTTGGTTCAGTAATGCGTTACAACA
EST: gi|208281278|gb|GE073706.1|GE073706
EST:     TGCTATCCCTATGTCTAGGCTTCCTTTACAAGCACCGCAAAATATTCAAG                         GTGTTGCTGCAAGGCCCCGAAAGGTTGTTGG
genomic: TGCTATCCCTATGTCTAGGCTTCCTTTACAAGCACCGCAAAATATTCAAGgtgtgatgat ... ctttctgtagGTGTTGCTGCAAGGCCCCGAAAGGTTGTTGG
EST: gi|193511261|gb|FK468474.1|FK468474
EST:     TGCTATCCCTATGTCTAGGCTTCCTTTACAAGCACCGCAAAATATTCAAG                         GTGTTGCTGCAAGGCCCCGAAAGGTTGTTGGTTCAGTAATGCGTTACAAC
genomic: TGCTATCCCTATGTCTAGGCTTCCTTTACAAGCACCGCAAAATATTCAAGgtgtgatgat ... ctttctgtagGTGTTGCTGCAAGGCCCCGAAAGGTTGTTGGTTCAGTAATGCGTTACAAC
EST: gi|193720858|gb|FK659022.1|FK659022
EST:     TGCTATCCCTATGTCTAGGCTTCCTTTACAAGCACCGCAAAATATTCAAG                         GTGTTGCTGCAAGGCCCTGAAAGGTTGTT
genomic: TGCTATCCCTATGTCTAGGCTTCCTTTACAAGCACCGCAAAATATTCAAGgtgtgatgat ... ctttctgtagGTGTTGCTGCAAGGCCCCGAAAGGTTGTT
EST: gi|193348349|gb|FK309557.1|FK309557
EST:     TGCTATCCCTATGTCTAGGCTTCCTTTACAAGCACCGCAAAATATTCAAG                         GTGTTGCTGCAAGGCCCCGAAAGGTTGTTGG
genomic: TGCTATCCCTATGTCTAGGCTTCCTTTACAAGCACCGCAAAATATTCAAGgtgtgatgat ... ctttctgtagGTGTTGCTGCAAGGCCCCGAAAGGTTGTTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcataatgctattgtaatccaatgtacattacatttgtggctcactttctgtagGTGTTGCTGCAAGGCCCCGAAAGGTTGTTGGTTCAGTAATGCGTTACAACAACTGTGGGGTAGCAGTGACGGCCGAGGCTGAACAGCGGAGGGTGGTCAG
                                       ggctcac  putative branch site (score: 3)
                                         ctcactttct  CT-rich tract
          tattgtaat  TA-rich tract