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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatatgtttccactctgtgtgtcccgttcgttatgtgataaactgataatggttttaatgttcttactcttacatgttgccatgttttttgggtgcatagGTTGAAGTTTTTCATCTCAAACAGAGACTTCAATCAATGGAAAAACGAGCCCCTACTCCCAGGAAACCTTTTCAAGTGTAGTGTTTTGAAAGGCCAATGA

Basic information

species Glycine max
transcript GLYMA15G10310.2
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G10310.2 (Glycine max), 3'ss of exon 9
lower sequence: Vv05s0020g01740.t01 (Vitis vinifera), 3'ss of exon 16
------aatatgtttccactctgtgtgtcccgttcgttatgtgataaactgataatggttttaatgttcttactcttacatgttgccatgttttttgggtgcatagGTTGAAGTTTTTCATCTCAAACAGAGACTTCAATCAATGGAAAAACGAGCCCCTACTCCCAGGAAACCTTTTCAAGTGTAGTGTTTTGAAAGGCCAATGA
         |  | |  |  |||      |       ||  | ||   || |||     |  |   |  | ||     || |||  |||   |  |   ||   ||||||||||||| ||||||||||| ||  | || || ||||| || ||||| || ||||||||||||||||| || |||||||  | | ||    || |  
cggtctgtgacatattaatcctgaacaaactaccttgtacttcatgccctaatatcaaatggagcctaataacaacc-caggtt--cat---tcatcaatgtgcagGTTGAAGTTTTCCATCTCAAACAAAGGTTGCAGTCCATGGAGAATCGAGCGCCAACTCCCAGGAAACCTTTCCACGTGTAGTAGTATCAAGAAACATTTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209720433|gb|BW669331.1|BW669331
EST:     CAACCAGAGGGGTTCTTGCAGCAGAAAGAACTAGGGCATTCCAATTACAG                         GTTGAAGTTTTTCATCTCAAACAGAGACTTCAATCAATGGAAAAACGAGCC
genomic: CAACCAGAGGGGTTCTTGCAGCAGAAAGAACTAGGGCATTCCAATTACAGgtaggattga ... gggtgcatagGTTGAAGTTTTTCATCTCAAACAGAGACTTCAATCAATGGAAAAACGAGCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataatggttttaatgttcttactcttacatgttgccatgttttttgggtgcatagGTTGAAGTTTTTCATCTCAAACAGAGACTTCAATCAATGGAAAAACGAGCCCCTACTCCCAGGAAACCTTTTCAAGTGTAGTGTTTTGAAAGGCCAATGA
                                       ttttttg  CT-rich tract
       ttttaatgttctta  TA-rich tract