1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gaaagttccctggtcttcttttattacttagtttttttgaattttttttcgtgtaatactagaaccatcatcacacactgtgtcgcctttttgtttgcagCTAAAATTATTTTTCCCTGTAGTGACGTTCGCAAAACCAAAAAGCAGCCGTAATTCCAGCATAG
species | Glycine max |
transcript | GLYMA15G07970.4 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: NTATTGCAAAGATATTTAGAGGAAAGGACACAAGCCTTCTATATTGTCAG CTAAAATTATTTTTCCCTGTAGTGACGTTCGCAAAACCAAAAAGCAGCCGTEST: gi|193636813|gb|FK580840.1|FK580840
genomic: TTATTGCAAAGATATTTAGAGGAAAGGACACAAGCCTTCTATATTGTCAGgtatttgaag ... ttgtttgcagCTAAAATTATTTTTCCCTGTAGTGACGTTCGCAAAACCAAAAAGCAGCCGT
EST: TTATTGCAAAGATATTTAGAGGAAAGGACACAAGCCTTCTATATTGTCAG CTAAAATTATTTTTCCCTGTAGTGACGTTCGCAAAACCAAAAAGCAGCCGTEST: gi|151411265|gb|EV281076.1|EV281076
genomic: TTATTGCAAAGATATTTAGAGGAAAGGACACAAGCCTTCTATATTGTCAGgtatttgaag ... ttgtttgcagCTAAAATTATTTTTCCCTGTAGTGACGTTCGCAAAACCAAAAAGCAGCCGT
EST: TTATTGCGAAGATATTTAGAGGAAAGGACACAAGCCTTCTATATTGTCAG CTAAAATTATTTTTCCCTGTAGTGACGTTCGCAAAACCAAAAAGCAGCCGT
genomic: TTATTGCAAAGATATTTAGAGGAAAGGACACAAGCCTTCTATATTGTCAGgtatttgaag ... ttgtttgcagCTAAAATTATTTTTCCCTGTAGTGACGTTCGCAAAACCAAAAAGCAGCCGT
ttttcgtgtaatactagaaccatcatcacacactgtgtcgcctttttgtttgcagCTAAAATTATTTTTCCCTGTAGTGACGTTCGCAAAACCAAAAAGCAGCCGTAATTCCAGCATAG
tcgcctttttgttt CT-rich tract
tttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaagttccctggtcttcttttattacttagtttttttgaattttttttcgtgtaatactagaaccatcatcacacactgtgtcgcctttttgtttgcagCTAAAATTATTTTTCCCTGTAGTGACGTTCGCAAAACCAAAAAGCAGCCGTAATTCCAGCATAG
- - -ttccctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtcgcc