1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ataaattccaggatacaataaataaatactatctagaagctggtgttattttcatttttttgggcctaattcttggtgctatgtactcattttggtacagAGGCATTCTGTCAGCCATAGATGTGGTGGGTGACCATGCAGTGATTGGA
species | Glycine max |
transcript | GLYMA15G07480.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCAGTTGCTCCTCCCATAGTTTTCAAAGGAAAATCCTTGAC AGGCATTCTGTCAGCCATAGATGTGGTGGGTGACCATGCAGTGATTGGAEST: gi|14991403|gb|BI317076.1|BI317076
genomic: GCAGTTGCTCCTCCCATAGTTTTCAAAGGAAAATCCTTGACgtacgataac ... tttggtacagAGGCATTCTGTCAGCCATAGATGTGGTGGGTGACCATGCAGTGATTGGA
EST: ATCTTAGCTGCAGTTGCTCCTCCCATAGTTTTCAAAGGAAAATCCTTGAC AGGCATTCTGTCAGCCATAGATGTGGTGGGTGACCATGCAGTGATTGGAEST: gi|4284462|gb|AI440784.1|AI440784
genomic: ATCTTAGCTGCAGTTGCTCCTCCCATAGTTTTCAAAGGAAAATCCTTGACgtacgataac ... tttggtacagAGGCATTCTGTCAGCCATAGATGTGGTGGGTGACCATGCAGTGATTGGA
EST: AGTTGCTCCTCCCATAGTTTTCAAAGGAAAATCCTTGAC AGGCATTCTGTCAGCCATAGATGTGGTGGGTGACCATGCAGTGATTGGA
genomic: AGTTGCTCCTCCCATAGTTTTCAAAGGAAAATCCTTGACgtacgataac ... tttggtacagAGGCATTCTGTCAGCCATAGATGTGGTGGGTGACCATGCAGTGATTGGA
ttattttcatttttttgggcctaattcttggtgctatgtactcattttggtacagAGGCATTCTGTCAGCCATAGATGTGGTGGGTGACCATGCAGTGATTGGA
gcctaat putative branch site (score: 3)
ctcatttt putative PPT
ttcattttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataaattccaggatacaataaataaatactatctagaagctggtgttattttcatttttttgggcctaattcttggtgctatgtactcattttggtacagAGGCATTCTGTCAGCCATAGATGTGGTGGGTGACCATGCAGTGATTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG