1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaaattgactgttccgcttttatgcatatgagctttgcttcatattcaaacaaaatttactaatcatgattcactttgtgcttgcagCTTCACCTAGGATTCTGTATCTTAGCTGCAGTTGCTCCTCCCATAGTTTTCAAAGGAAAATCCTTGAC
species | Glycine max |
transcript | GLYMA15G07480.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GACTGACAGTGCTTTGAATTTTGGATGGTTTTTCTTGTTTTACCTG CTTCACCTAGGATTCTGTATCTTAGCTGCAGTTGCTCCTCCCATAGTTTTCEST: gi|10255229|gb|BE822995.1|BE822995
genomic: GACTGACAGTGCTTTGAATTTTGGATGGTTTTTCTTGTTTTACCTGgtaaattgac ... gtgcttgcagCTTCACCTAGGATTCTGTATCTTAGCTGCAGTTGCTCCTCCCATAGTTTTC
EST: GACTGACAGTGCTTTGAATTTTGGATGGTTTTTCTTGTTTTACCTG CTTCACCTAGGATTCTGTATCTTAGCTGCAGTTGCTCCTCCCATAGTTTTCEST: gi|16343904|gb|BI969499.1|BI969499
genomic: GACTGACAGTGCTTTGAATTTTGGATGGTTTTTCTTGTTTTACCTGgtaaattgac ... gtgcttgcagCTTCACCTAGGATTCTGTATCTTAGCTGCAGTTGCTCCTCCCATAGTTTTC
EST: GACTGACAGTGCTTTGAATTTTGGATGGTTTTTCTTGTTTTACCTG CTTCACCTAGGATTCTGTATCTTAGCTGCAGTTGCTCCTCCCATAGTTTTC
genomic: GACTGACAGTGCTTTGAATTTTGGATGGTTTTTCTTGTTTTACCTGgtaaattgac ... gtgcttgcagCTTCACCTAGGATTCTGTATCTTAGCTGCAGTTGCTCCTCCCATAGTTTTC
ctttgcttcatattcaaacaaaatttactaatcatgattcactttgtgcttgcagCTTCACCTAGGATTCTGTATCTTAGCTGCAGTTGCTCCTCCCATAGTTTTCAAAGGAAAATCCTTGAC
tactaat putative branch site (score: 1)
atattcaaacaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaattgactgttccgcttttatgcatatgagctttgcttcatattcaaacaaaatttactaatcatgattcactttgtgcttgcagCTTCACCTAGGATTCTGTATCTTAGCTGCAGTTGCTCCTCCCATAGTTTTCAAAGGAAAATCCTTGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA