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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatattttttctttttgtttgctgaaaatcttacctaaatcattatccccatatcagttgtttagcacaatagttcagtagcagataattatttatctatgtagGAGCTAAAAGGAAATATTCGCGTGTTCTGCCGTGTCCGACCTTTGCTACCGGATGATGGTCCTGGAACAGATATGGTTGTTTCATATCCCACGTCAACCG

Basic information

species Glycine max
transcript GLYMA15G06880.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G06880.1 (Glycine max), 3'ss of exon 9
lower sequence: AT4G05190.1 (Arabidopsis thaliana), 3'ss of exon 9
gtaaatattttttctttttgtttgctgaaaatcttacctaaatcattatccccatatcagttgtttagcacaatagttcagtagcagataattatttatctatgtagGAGCTAAAAGGAAATATTCGCGTGTTCTGCCGTGTCCGACCTTTGCTACCGGATGATGGT---CCTGGAACAGATATGGTTGTTTCATATCCCACGTCAACCG
                     |     ||  || |     || || | | |   |||    ||  |  |   || |      ||||   ||   |||||   |  |||| || |||||||| || |||||||||||||| || || || |||||||| ||||||||    |    |   |  |  ||| || | ||||| || ||||   
--------------------gtaagaaaatgtcgttttggaaacacttttcagttatagtatgactttctttatggccgctaagca---aagcttttat---tccagGAACTCAAAGGAAACATACGCGTGTTCTGCCGAGTGCGCCCCTTGCTACCAGATGATGGAGGACGCCAAGAGGCCAGTGTTATTGCCTATCCTACATCAA---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193434229|gb|FK399275.1|FK399275
EST:     AAGTAATTGAA-GGGAGAAGTTAAGG-AAAAATTGCATAACACTATCCTG                         GAGCTAAAAGGAAATATTCGCGTGTTCTGCCGTGTCCGACCTTTGCTACCG
genomic: AAGTAATTGAAGGGGAGAAGTTAAGGAAAAAATTGCATAACACTATCCTGgtaaatattt ... atctatgtagGAGCTAAAAGGAAATATTCGCGTGTTCTGCCGTGTCCGACCTTTGCTACCG
EST: gi|193406084|gb|FK370941.1|FK370941
EST:     GGGAGAAGTT-AGG-AAAAATTGCATAACACTATCCTG                         GAGCTAAAAGGAAATATTCGCGTGTTCTGCCGTGTCCGACCTTTGCTACCG
genomic: GGGAGAAGTTAAGGAAAAAATTGCATAACACTATCCTGgtaaatattt ... atctatgtagGAGCTAAAAGGAAATATTCGCGTGTTCTGCCGTGTCCGACCTTTGCTACCG
EST: gi|193425839|gb|FK385730.1|FK385730
EST:     AAGTAATTGAA-GGGAGAAGTTAAGG-AAAAATTGCATAACACTATCCTG                         GAGCTAAAAGGAAATATTCGCGTGTTCTGCCGTGTCCGACCTTTGCTACCG
genomic: AAGTAATTGAAGGGGAGAAGTTAAGGAAAAAATTGCATAACACTATCCTGgtaaatattt ... atctatgtagGAGCTAAAAGGAAATATTCGCGTGTTCTGCCGTGTCCGACCTTTGCTACCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catatcagttgtttagcacaatagttcagtagcagataattatttatctatgtagGAGCTAAAAGGAAATATTCGCGTGTTCTGCCGTGTCCGACCTTTGCTACCGGATGATGGTCCTGGAACAGATATGGTTGTTTCATATCCCACGTCAACCG
                                          tttatct  CT-rich tract
                                 agataattatttatct  TA-rich tract