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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcatagatttcactattcattattcctatatgttgcttactcttacagttaaaatttggtattggtaaacagTATCTTCCTCGTGTTGTGCCTCTTGCATTTTCTTCCTGCAATCTTGATGATGGCTCTGCGGTTGACATTGATGAGTGCGACGATGAAATCGCTAATGGAT

Basic information

species Glycine max
transcript GLYMA15G05090.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G05090.1 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G408305_T01 (Zea mays), 3'ss of exon 12
gtatgcatagatttcacta-ttcatt--attcctatatgttgctt-actcttacagttaaaatttggtattggtaaacagTATCTTCCTCGTGTTGTGCCTCTTGCATTTTCTTCCTGCAATCTTGATGATGGCTCTGCGGTTGACATTGATGAGTGCGACGATGAAATCGCTAATGGAT---
|||   |  |  || |  | || |||  ||| ||   || || ||  |  ||||       | ||| |    ||   ||||||||||||| |||||| ||||| | |||||||||||||||  | |||||||| ||||| || |||||||||||    | ||||   || |  |||||||   
gtaacaagggtctttaaaagtttatttaatttctgattgatgttttgcatttaccaaagtgagttgtttcacgttt-cagTATCTTCCTCATGTTGTCCCTCTCGTATTTTCTTCCTGCAACTTGGATGATGGTTCTGCTGTGGACATTGATGA---TGCCGATAGCATTGAAAATGGATTTG

upper sequence: GLYMA15G05090.1 (Glycine max), 3'ss of exon 9
lower sequence: AT4G27640.1 (Arabidopsis thaliana), 3'ss of exon 9
gtatgcatagatttc-----actattcattattcctatatgttgcttactcttacagttaaaatttggtattggtaaacagTATCTTCCTCGTGTTGTGCCTCTTGCATTTTCTTCCTGCAATCTTGATGATGGCTCTGCGGTTGACATTGATGAGTGCGACGATGAAATCGCTAATGGAT
|| |||||| |||||     | ||  | | ||     |    || |||   ||| ||| || ||   || ||      |||||| | ||||||||| ||||  | | |||| |||| ||||||||||||||||| ||||| || |||||||||||||  || |||||||  |  ||||  |
gtgtgcatacatttctttcaaatagacttcataatactccagtgattaggtttaaagtaaacatagcgt-ttttcccgcagTATTTGCCTCGTGTTATGCCATTAGTATTTGCTTCGTGCAATCTTGATGATGGATCTGCAGTGGACATTGATGAGTCAGATGATGAAAATGTCAATGATT

upper sequence: GLYMA15G05090.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv12s0034g02160.t01 (Vitis vinifera), 3'ss of exon 9
gtatgcatagatttcactattcattattcctatatgttgcttactctta----------cagttaaaatttggtattggtaaacagTATCTTCCTCGTGTTGTGCCTCTTGCATTTTCTTCCTGCAATCTTGATGATGGCTCTGCGGTTGACATTGATGAGTGCGACGATGAAATCGCTAATGGAT
||||  | | | |||  | |  ||||    ||| || |  || || |||              |||||  |  | |||| |||||||||||||| | |||||| ||||| |||||||| |||||||||||||||||||| ||||| || ||||||||||| |  || ||||||| |   |||||||
gtat-tacacagttctatttgaattaagtttatgtgataatttcttttagccatgtttatgtgtaaaaagttattttggcaaacagTATCTTCCACATGTTGTACCTCTGGCATTTTCGTCCTGCAATCTTGATGATGGTTCTGCTGTGGACATTGATGAATCTGATGATGAAAACATCAATGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattattcctatatgttgcttactcttacagttaaaatttggtattggtaaacagTATCTTCCTCGTGTTGTGCCTCTTGCATTTTCTTCCTGCAATCTTGATGATGGCTCTGCGGTTGACATTGATGAGTGCGACGATGAAATCGCTAATGGAT
                         ttacagttaaaattt  TA-rich tract