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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgttgcaagattaatttagtaatttgctcgattcttagatttatgtatctttacggggacttttaatttctcacacattatatgaatatactttcttttacagATTGTCAATGAGTACAATGAATTGCTTGCTACTCAACTTGAAAACCAAAAATTAGTAAGTGTACTTCATTTGTCCCTTGCTGTGAATCTGCAAAACATTG

Basic information

species Glycine max
transcript GLYMA15G00770.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G00770.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv00s0125g00250.t01 (Vitis vinifera), 3'ss of exon 7
gtaatgttgcaagattaatttagtaatttgctcgattcttagatttatgtatctttacggggacttttaatttctcacac---attatatgaatatac---tttcttttacagATTGTCAATGAGTACAATGAATTGCTTGCTACTCAACTTGAAAACCAAAAATTAGTAAGTGTACTTCATTTGTCCCTTGCTGTGAATCTGCAAAACATTG
             | || |||| | ||   ||  |  |    |||  | || | |||    |    |   || || |      || |||   ||   |   | | |||||||||||||||||||||||| |||  | ||  |||| |||||||| |||||||||||                                               
----------gtaactattttattcatcatctttaaac---aattcttttaacctta-aaagctgctatgttccttatgttcaatgatactcattccccagtgttttttacagATTGTCAATGAGTACAGTGATCTCCTCACTACCCAACTTGAGAACCAAAAATTG----------------------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttacggggacttttaatttctcacacattatatgaatatactttcttttacagATTGTCAATGAGTACAATGAATTGCTTGCTACTCAACTTGAAAACCAAAAATTAGTAAGTGTACTTCATTTGTCCCTTGCTGTGAATCTGCAAAACATTG
                   ttctcac  putative branch site (score: 2)
                                        tactttctttt  putative PPT
                            attatatgaatatact  TA-rich tract