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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacattgccaatttgccatgcttgttccttatacatcaagggaatttattgtgaaattcacttcactgagtttgttaatattcataaagttgtggatttatgttttgtgcagGATTTCAGTGATGAGAAACCTTTAGCATGGAGTCATTTCACTGCTGAGGGTGATGTTGAGTTCAAGGCAGTCCTGTTTGTACCACCTAAGGCACCTCAAG

Basic information

species Glycine max
transcript GLYMA14G40320.2
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G40320.2 (Glycine max), 3'ss of exon 9
lower sequence: LOC_Os06g50300.1 (Oryza sativa), 3'ss of exon 9
gtaacattgccaatttgccatgcttgttccttatacatcaagggaatttattgtgaaattcacttcactgagtttgttaatattcataaagttgtggatttatgttttgtgcagGATTTCAGTGATGAGAAACCTTTAGCATGGAGTCATTTCACTGCTGAGGGTGATGTTGAGTTCAAGGCAGTCCTGTTTGTACCACCTAAGGCACCTCAAG
      |   ||   |||  || |   |  ||| |     |    ||||  ||| |   |  |   |   ||   || |    ||||  | |     |||    ||||||  |||| ||  ||||||| || || ||  | ||||| || |||||||||||||| |||||||||||||| ||  | || ||||| || || ||||| || || |
-----gtacacagactgcagtgatgaat--ttacaggagcataacattttatgtaagccttgcagaagaaagcaagtaacc--tcatttaatatcaaatt---attttgt--agGACTTTGGTGATGACAAGCCCTTGTCTTGGAGCCACTTCACTGCTGAGGGAGATGTTGAGTTCAAAGCTTTGCTCTTTGTTCCTCCCAAGGCTCCACATG

upper sequence: GLYMA14G40320.2 (Glycine max), 3'ss of exon 9
lower sequence: Vv18s0001g14500.t01 (Vitis vinifera), 3'ss of exon 9
gtaacattgccaatttgccatgcttgttccttatacatcaagggaattt-attgtgaaattcacttcactgagtttgttaatattcataaagttgtggatttatgtt---ttgt---gcagGATTTCAGTGATGAGAAACCTTTAGCATGGAGTCATTTCACTGCTGAGGGTGATGTTGAGTTCAAGGCAGTCCTGTTTGTACCACCTAAGGCACCTCAAG
| || ||| ||||||  || || |  ||| ||| |  ||||   | | | |||||    ||    |  |  ||| |     | | ||| |  | |   |  ||| ||   ||||    |||||||| ||||| ||||| ||| || |||||||||| ||||| ||||| |||||||| ||||||||||| ||  ||||||| || |||||||| ||||| |
gcaa-att-ccaattc-ccttggt--ttcattacatttcaaaatactctgattgttttttttggcttcccaagtatcactctttccatcagttggataacatattttatcttgttcaacagGATTTTAGTGAAGAGAAGCCTCTATCATGGAGTCACTTCACCGCTGAAGGTGATGTGGAGTTCAAGGCTGTTTTGTTTGTGCCTCCTAAGGCTCCTCAGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298169805|gb|HO018429.1|HO018429
EST:     AAGAGGTTACAGAAGAAGAATACACCAAATTCTACCACTCTCTTGCCAAG                         GATTTCAGTGATGAGAAACCTTTAGCATGGAGTCATCTCACTGCTGAGGGT
genomic: AAGAGGTTACAGAAGAAGAATACACCAAATTCTACCACTCTCTTGCCAAGgtaacattgc ... ttttgtgcagGATTTCAGTGATGAGAAACCTTTAGCATGGAGTCATTTCACTGCTGAGGGT
EST: gi|57574607|gb|CX547582.1|CX547582
EST:     AAGAGGTTACAGAAGAAGAATACACCAAATTCTACCACTCTCTTGCCAAG                         GATTTCAGTGATGAGAAACCTTTAGCATGGAGTCATTTCACTGCTGAGGGT
genomic: AAGAGGTTACAGAAGAAGAATACACCAAATTCTACCACTCTCTTGCCAAGgtaacattgc ... ttttgtgcagGATTTCAGTGATGAGAAACCTTTAGCATGGAGTCATTTCACTGCTGAGGGT
EST: gi|8283891|gb|BE021450.1|BE021450
EST:     AAGAGGTTACAGAAGAAGAATACACCAAATTCTACCACTCTCTTGCCAAG                         GATTTCAGTGATGAGAAACCTTTAGCATGGAGTCATTTCACTGCTGAGGGT
genomic: AAGAGGTTACAGAAGAAGAATACACCAAATTCTACCACTCTCTTGCCAAGgtaacattgc ... ttttgtgcagGATTTCAGTGATGAGAAACCTTTAGCATGGAGTCATTTCACTGCTGAGGGT
EST: gi|192301679|gb|FG997621.1|FG997621
EST:     AGAATACACCAAATTCTACCACTCTCTTGCCAAG                         GATTTCAGTGATGAGAAACCTTTAGCATGGAGTCATTTCACTGCTGAGGGT
genomic: AGAATACACCAAATTCTACCACTCTCTTGCCAAGgtaacattgc ... ttttgtgcagGATTTCAGTGATGAGAAACCTTTAGCATGGAGTCATTTCACTGCTGAGGGT
EST: gi|193583665|gb|FK539323.1|FK539323
EST:     AATTCTACCACTCTCTTGCCAAG                         GATTTCAGTGATGAGAAACCTTTAGCATGGAGTCATTTCACTGCTGAGGGT
genomic: AATTCTACCACTCTCTTGCCAAGgtaacattgc ... ttttgtgcagGATTTCAGTGATGAGAAACCTTTAGCATGGAGTCATTTCACTGCTGAGGGT
EST: gi|58019806|gb|CX706548.1|CX706548
EST:     AAGAGGTTACAGAAGAAGAATACACCAAATTCTACCACTCTCTTGCCAAG                         GATTTCAGTGATGAGAAACCTTTAGCATGGAGTCATTTCACTGCTGAGGGT
genomic: AAGAGGTTACAGAAGAAGAATACACCAAATTCTACCACTCTCTTGCCAAGgtaacattgc ... ttttgtgcagGATTTCAGTGATGAGAAACCTTTAGCATGGAGTCATTTCACTGCTGAGGGT
EST: gi|208331878|gb|GE130701.1|GE130701
EST:     CACCAAATTCTACCACTCTCTTGCCAAG                         GATTTCAGTGATGAGAAACCTTTAGCATGGAGTCATTTCACTGCTGAGGGC
genomic: CACCAAATTCTACCACTCTCTTGCCAAGgtaacattgc ... ttttgtgcagGATTTCAGTGATGAGAAACCTTTAGCATGGAGTCATTTCACTGCTGAGGGT
EST: gi|208227053|gb|GE024154.1|GE024154
EST:     TACACCAAATTCTACCACTCTCTTGCCAAG                         GATTTCAGTGATGAGAAACCTTTAGCATGGAGTCAT
genomic: TACACCAAATTCTACCACTCTCTTGCCAAGgtaacattgc ... ttttgtgcagGATTTCAGTGATGAGAAACCTTTAGCATGGAGTCAT
EST: gi|192309871|gb|FK001415.1|FK001415
EST:     AAGAGGTTACAGAAGAAGAATACACCAAATTCTACCACTCTCTTGCCAAG                         GATTTCAGTGATGAGAAACCTTTAGCATGGAGTCATTTCACTGCTGAGGGT
genomic: AAGAGGTTACAGAAGAAGAATACACCAAATTCTACCACTCTCTTGCCAAGgtaacattgc ... ttttgtgcagGATTTCAGTGATGAGAAACCTTTAGCATGGAGTCATTTCACTGCTGAGGGT
EST: gi|193429754|gb|FK392798.1|FK392798
EST:     AAGAGGTTACAGAAGAAGAATACACCAAATTCTACCACTCTCTTGCCAAG                         GATTTCAGTGATGAGAAACCTTTAGCATGGAGTCATTTCACTGCTGAGGGT
genomic: AAGAGGTTACAGAAGAAGAATACACCAAATTCTACCACTCTCTTGCCAAGgtaacattgc ... ttttgtgcagGATTTCAGTGATGAGAAACCTTTAGCATGGAGTCATTTCACTGCTGAGGGT
EST: gi|193476836|gb|FK442637.1|FK442637
EST:     AAGAGGTTACAGAAGAAGAATACACCAAATTCTACCACTCTCTTGCCAAG                         GATTTCAGTGATGAGAAACCTTTAGCATGGAGTCATTTCACTGCTGAGGGT
genomic: AAGAGGTTACAGAAGAAGAATACACCAAATTCTACCACTCTCTTGCCAAGgtaacattgc ... ttttgtgcagGATTTCAGTGATGAGAAACCTTTAGCATGGAGTCATTTCACTGCTGAGGGT
EST: gi|23059035|gb|BU578351.1|BU578351
EST:     CACTCTCTTGCCAAG                         GATTTCAGTGATGAGAAACCTTTAGCATGGAGTCATTTCACTGCTGAGGGT
genomic: CACTCTCTTGCCAAGgtaacattgc ... ttttgtgcagGATTTCAGTGATGAGAAACCTTTAGCATGGAGTCATTTCACTGCTGAGGGT
EST: gi|7233546|gb|AW568951.1|AW568951
EST:     CACCAAATTCTACCACTCTCTTGCCAAG                         GATTTCAGTGATGAGAAACCTTTAGCATGGAGTCATTTCACTGCTGAGGGT
genomic: CACCAAATTCTACCACTCTCTTGCCAAGgtaacattgc ... ttttgtgcagGATTTCAGTGATGAGAAACCTTTAGCATGGAGTCATTTCACTGCTGAGGGT
EST: gi|213592217|gb|DB965980.1|DB965980
EST:     AAGAGGTTACAGAAGAAGAATACACCAAATTCTACCACTCTCTTGCCAAG                         GATTTCAGTGATGAGAAACCTTTAGCATGGAGTCATTTCACTGCTGAGGGT
genomic: AAGAGGTTACAGAAGAAGAATACACCAAATTCTACCACTCTCTTGCCAAGgtaacattgc ... ttttgtgcagGATTTCAGTGATGAGAAACCTTTAGCATGGAGTCATTTCACTGCTGAGGGT
EST: gi|254328195|gb|GR835160.1|GR835160
EST:     AAGAGGTTACAGAAGAAGAATACACCAAATTCTACCACTCTCTTGCCAAG                         GATTTCAGTGATGAGAAACCTTTAGCATGGAGTCATTTCACTGCTGAGGGT
genomic: AAGAGGTTACAGAAGAAGAATACACCAAATTCTACCACTCTCTTGCCAAGgtaacattgc ... ttttgtgcagGATTTCAGTGATGAGAAACCTTTAGCATGGAGTCATTTCACTGCTGAGGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcacttcactgagtttgttaatattcataaagttgtggatttatgttttgtgcagGATTTCAGTGATGAGAAACCTTTAGCATGGAGTCATTTCACTGCTGAGGGTGATGTTGAGTTCAAGGCAGTCCTGTTTGTACCACCTAAGGCACCTCAAG
               tgttaat  putative branch site (score: 3)
             tttgttaatattcata  TA-rich tract