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gtaatgtgatagctgaattggtgatgtttctatgttgtttatttatttcatgatgactaaattcataatatcatatgttcatgtagGTTAGGGTGAAAAATCTGAAACTTGTTGGTAGTGATGGATGGAACCTTATGCGTGAAGGTGAAGCAGAGAAGCAG
species | Glycine max |
transcript | GLYMA14G39890.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGTTTGTAAAAGATATAGAGAAAACGATAAATAAAATGGAGAATAAACTG GTTAGGGTGAAAAATCTGAAACTTGTTGGTAGTGATGGATGGAACCTTATGEST: gi|14259851|gb|BG882759.1|BG882759
genomic: TGTTTGTAAAAGATATAGAGAAAACGATAAATAAAATGGAGAATAAACTGgtaatgtgat ... gttcatgtagGTTAGGGTGAAAAATCTGAAACTTGTTGGTAGTGATGGATGGAACCTTATG
EST: TGTTTGTAAAAGATATAGAGAAAACGATAAATAAAATGGAGAATAAACTG GTTAGGGTGAAAAATCTGAAACTTGTTGGTAGTGATGGATGGAACCTTATGEST: gi|51342518|gb|CO983503.1|CO983503
genomic: TGTTTGTAAAAGATATAGAGAAAACGATAAATAAAATGGAGAATAAACTGgtaatgtgat ... gttcatgtagGTTAGGGTGAAAAATCTGAAACTTGTTGGTAGTGATGGATGGAACCTTATG
EST: TGTTTGTAAAAGATATAGAGAAAACGATAAATAAAATGGAGAATAAACTG GTTAGGGTGAAAAATCTGAAACTTGTTGGTAGTGATGGATGGAACCTTATGEST: gi|58017398|gb|CX704140.1|CX704140
genomic: TGTTTGTAAAAGATATAGAGAAAACGATAAATAAAATGGAGAATAAACTGgtaatgtgat ... gttcatgtagGTTAGGGTGAAAAATCTGAAACTTGTTGGTAGTGATGGATGGAACCTTATG
EST: TGTTTGTAAAAGATATAGAGAAAACGATAAATAAAATGGAGAATAAACTG GTTAGGGTGAAAAATCTGAAACTTGTTGGTAGTGATGGATGGAACCTTATGEST: gi|58017203|gb|CX703945.1|CX703945
genomic: TGTTTGTAAAAGATATAGAGAAAACGATAAATAAAATGGAGAATAAACTGgtaatgtgat ... gttcatgtagGTTAGGGTGAAAAATCTGAAACTTGTTGGTAGTGATGGATGGAACCTTATG
EST: TGTTTGTAAAAGATATAGAGAAAACGATAAATAAAATGGAGAATAAACTG GTTAGGGTGAAAAATCTGAAACTTGTTGGTAGTGATGGATGGAACCTTATGEST: gi|51342063|gb|CO983330.1|CO983330
genomic: TGTTTGTAAAAGATATAGAGAAAACGATAAATAAAATGGAGAATAAACTGgtaatgtgat ... gttcatgtagGTTAGGGTGAAAAATCTGAAACTTGTTGGTAGTGATGGATGGAACCTTATG
EST: TGTTTGTAAAAGATATAGAGAAAACGATAAATAAAATGGAGAATAAACTG GTTAGGGTGAAAAATCTGAAACTTGTTGGTAGTGATGGATGGAACCTTATG
genomic: TGTTTGTAAAAGATATAGAGAAAACGATAAATAAAATGGAGAATAAACTGgtaatgtgat ... gttcatgtagGTTAGGGTGAAAAATCTGAAACTTGTTGGTAGTGATGGATGGAACCTTATG
atgttgtttatttatttcatgatgactaaattcataatatcatatgttcatgtagGTTAGGGTGAAAAATCTGAAACTTGTTGGTAGTGATGGATGGAACCTTATGCGTGAAGGTGAAGCAGAGAAGCAG
gactaaa putative branch site (score: 2)
tttatttatttcatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgtgatagctgaattggtgatgtttctatgttgtttatttatttcatgatgactaaattcataatatcatatgttcatgtagGTTAGGGTGAAAAATCTGAAACTTGTTGGTAGTGATGGATGGAACCTTATGCGTGAAGGTGAAGCAGAGAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC