1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atcgtatacttggtaacagtagtgcaaaatgtgaatgtgttagggacattctacattctgtctttaaaaatcctataatgttttttttttttgctttcagTGTGGATCAGGAAGATCAGTTGCTCCAATCAAGGCTGGTTTTGTTGCTCGTGTTGGCCGAAGGAACACAGGGACATAGTCCTACTTTTGATTTATGTTAT
species | Glycine max |
transcript | GLYMA14G38600.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATACTATACTTTCAAAGGAGAATCGTCTCTTCTTTCTCCGGTGTGAGAAG TGTGGATCAGGAAGATCAGTTGCTCCEST: gi|151398862|gb|EV268733.1|EV268733
genomic: ATACTATACTTTCAAAGGAGAATCGTCTCTTCTTTCTCCGGTGTGAGAAGgtgaattttc ... ttgctttcagTGTGGATCAGGAAGATCAGTTGCTCC
EST: ATACTATACTTTCAAAGGAGAATCGTCTCTTCTTTCTCCGGTGTGAGAAG TGTGGATCAGGAAGATCAGTTGCTCCAATCAAGGCTGGTTTTGTTGCTCGTEST: gi|298182522|gb|HO031257.1|HO031257
genomic: ATACTATACTTTCAAAGGAGAATCGTCTCTTCTTTCTCCGGTGTGAGAAGgtgaattttc ... ttgctttcagTGTGGATCAGGAAGATCAGTTGCTCCAATCAAGGCTGGTTTTGTTGCTCGT
EST: ATACTATACTTTCAAAGGAGAATCGTCTCTTCTTTCTCCGGTGTGAGAAG TGTGGATCAGGAAGATCAGTTGCTCCAEST: gi|9983218|gb|BE657326.1|BE657326
genomic: ATACTATACTTTCAAAGGAGAATCGTCTCTTCTTTCTCCGGTGTGAGAAGgtgaattttc ... ttgctttcagTGTGGATCAGGAAGATCAGTTGCTCCA
EST: ATACTATACTTTCAAAGGAGAATCGTCTCTTCTTTCTCCGGTGTGAGAAG TGTGGATCAGGAAGATCAGTTGCTCCAATCAAGGCTGGTTTTGTTGCTCGTEST: gi|192309791|gb|FG999920.1|FG999920
genomic: ATACTATACTTTCAAAGGAGAATCGTCTCTTCTTTCTCCGGTGTGAGAAGgtgaattttc ... ttgctttcagTGTGGATCAGGAAGATCAGTTGCTCCAATCAAGGCTGGTTTTGTTGCTCGT
EST: ATACTATACTTTCAAAGGAGAATCGTCTCTTCTTTTTCCGGTGTGAGAAG TGTGGATCAGGAAGATCAGTTGCTCCAATCGAGGCTGGTTTTGTTGCTCGTEST: gi|192296247|gb|FG992263.1|FG992263
genomic: ATACTATACTTTCAAAGGAGAATCGTCTCTTCTTTCTCCGGTGTGAGAAGgtgaattttc ... ttgctttcagTGTGGATCAGGAAGATCAGTTGCTCCAATCAAGGCTGGTTTTGTTGCTCGT
EST: ATACTATACTTTCAAAGGAGAATCGTCTCTTCTTTTTCCGGTGTGAGAAG TGTGGATCAGGAAGATCAGTTGCTCCAATCAAGGCTGGTTTTGTTGCTCGTEST: gi|193720942|gb|FK661206.1|FK661206
genomic: ATACTATACTTTCAAAGGAGAATCGTCTCTTCTTTCTCCGGTGTGAGAAGgtgaattttc ... ttgctttcagTGTGGATCAGGAAGATCAGTTGCTCCAATCAAGGCTGGTTTTGTTGCTCGT
EST: ATACTATACTTTCAAAGGAGAATCGTCTCTTCTTTCTCCGGTGTGAGAAG TGTGGATCAGGAAGATCEST: gi|10235771|gb|BE804659.1|BE804659
genomic: ATACTATACTTTCAAAGGAGAATCGTCTCTTCTTTCTCCGGTGTGAGAAGgtgaattttc ... ttgctttcagTGTGGATCAGGAAGATC
EST: ATACTATACTTTCAAAGGAGAATCGTCTCTTCTTTCTCCGGTGTGAGAAG TGTGGATCAGGAAGATCAGTCGCTCCAATCAAGGCTGGTTTTGTTGCTCGTEST: gi|192299974|gb|FG991820.1|FG991820
genomic: ATACTATACTTTCAAAGGAGAATCGTCTCTTCTTTCTCCGGTGTGAGAAGgtgaattttc ... ttgctttcagTGTGGATCAGGAAGATCAGTTGCTCCAATCAAGGCTGGTTTTGTTGCTCGT
EST: ATACTATACTTTCAAAGGAGAATCGTCTCTTCTTTCTCCGGTGTGAGAAG TGTGGATCAGGAAGATCAGTTGCTCCAATCAAGGCTGGTTTTGTTGCTCGTEST: gi|193383251|gb|FK348604.1|FK348604
genomic: ATACTATACTTTCAAAGGAGAATCGTCTCTTCTTTCTCCGGTGTGAGAAGgtgaattttc ... ttgctttcagTGTGGATCAGGAAGATCAGTTGCTCCAATCAAGGCTGGTTTTGTTGCTCGT
EST: ATACTATACTTTCAAAGGAGAATCGTCTCTTCTTTCTCCGGTGTGAGAAG TGTGGATCAGGAAGATCAGTTGCTCCAATCAAGGCTGGTTTTGTTGCTCGT
genomic: ATACTATACTTTCAAAGGAGAATCGTCTCTTCTTTCTCCGGTGTGAGAAGgtgaattttc ... ttgctttcagTGTGGATCAGGAAGATCAGTTGCTCCAATCAAGGCTGGTTTTGTTGCTCGT
acattctacattctgtctttaaaaatcctataatgttttttttttttgctttcagTGTGGATCAGGAAGATCAGTTGCTCCAATCAAGGCTGGTTTTGTTGCTCGTGTTGGCCGAAGGAACACAGGGACATAGTCCTACTTTTGATTTATGTTAT
tgttttttttttttgc CT-rich tract
tttaaaaatcctataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcgtatacttggtaacagtagtgcaaaatgtgaatgtgttagggacattctacattctgtctttaaaaatcctataatgttttttttttttgctttcagTGTGGATCAGGAAGATCAGTTGCTCCAATCAAGGCTGGTTTTGTTGCTCGTGTTGGCCGAAGGAACACAGGGACATAGTCCTACTTTTGATTTATGTTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - agtgcaa
- - - - - - - - - - - - - - - - gaatgtg
- - - - - - - - - - - - - - - - - - - - - - gacattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaatcc