1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tctgtttgatgcaacatatttactcgctcatctgttatatacttggttcaagagttcttattgttctgtttaatattccatctgttctctgtatgctcagGATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCTGCACGAAAGTTAACAGAAGCAGCATTTTCTCGTGGGAGTGCAGATAACATTACAT
species | Glycine max |
transcript | GLYMA14G31890.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AACTGATTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGAT GATGCTGTTTCTCTTGCCCGCACGGAAGAAGAGCCTGANGCAGCTGCACGAEST: gi|254347036|gb|GR856706.1|GR856706
genomic: AACTGATTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGATgtaagctttg ... gtatgctcagGATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCTGCACGA
EST: AACTGATTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGAT GATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCTGCACGAEST: gi|6726794|gb|AW311148.1|AW311148
genomic: AACTGATTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGATgtaagctttg ... gtatgctcagGATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCTGCACGA
EST: AACTGATTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGAT GATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCTGCACGAEST: gi|14011351|gb|BG726273.1|BG726273
genomic: AACTGATTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGATgtaagctttg ... gtatgctcagGATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCTGCACGA
EST: AACTGATTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGAT GATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCTGCACGAEST: gi|19348049|gb|BM892581.1|BM892581
genomic: AACTGATTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGATgtaagctttg ... gtatgctcagGATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCTGCACGA
EST: AACTGATTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGAT GATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCTGCACGAEST: gi|7588767|gb|AW704555.1|AW704555
genomic: AACTGATTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGATgtaagctttg ... gtatgctcagGATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCTGCACGA
EST: AACTGATTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGAT GATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAEST: gi|15337173|gb|BI497829.1|BI497829
genomic: AACTGATTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGATgtaagctttg ... gtatgctcagGATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGA
EST: AACTGATTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGAT GATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCTGCACGAEST: gi|16344154|gb|BI969749.1|BI969749
genomic: AACTGATTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGATgtaagctttg ... gtatgctcagGATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCTGCACGA
EST: AACTGATTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGAT GATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCTGCACGAEST: gi|208076237|gb|GD879044.1|GD879044
genomic: AACTGATTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGATgtaagctttg ... gtatgctcagGATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCTGCACGA
EST: AACTGATTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGAT GATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCTGCACGA
genomic: AACTGATTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGATgtaagctttg ... gtatgctcagGATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCTGCACGA
gttcaagagttcttattgttctgtttaatattccatctgttctctgtatgctcagGATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCTGCACGAAAGTTAACAGAAGCAGCATTTTCTCGTGGGAGTGCAGATAACATTACAT
gtttaat putative branch site (score: 4)
ttctctgt putative PPT
ttctgtttaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgtttgatgcaacatatttactcgctcatctgttatatacttggttcaagagttcttattgttctgtttaatattccatctgttctctgtatgctcagGATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCTGCACGAAAGTTAACAGAAGCAGCATTTTCTCGTGGGAGTGCAGATAACATTACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - tgatgca
- - - - - - - - - - - ctcgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctgtt