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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattggtttagttgctaactcataatgacttagctgtatttcatatttttgttttgttgcttctcttatgttggttctgttgctttcacaagtagGTGAAGAAGCATCTGAAAAATGGGAAAAATGTTTCTATGGGGTTTGGATTTGTTGAGTTTGACTCCCCTGAAACTGCTACAAATGTTTGCAGAGATTTAC

Basic information

species Glycine max
transcript GLYMA14G24510.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G24510.1 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G031529_T01 (Zea mays), 3'ss of exon 10
gtattggtttagttgctaactcataatgacttagctgtatttcatatttttgttttgttgcttctcttatgttggttctgttgctttcacaagtagGTGAAGAAGCATCTGAAAAATGGGAAAAATGTTTCTATGGGGTTTGGATTTGTTGAGTTTGACTCCCCTGAAACTGCTACAAATGTTTGCAGAGATTTAC
                        | |    ||  ||   ||  ||| | | |   |    | || || | |   || | ||  | |  |   ||||||||||||||| | || || || || |||||||| ||||| ||||| |||||||||||||||||   ||||||||||||   ||| ||||  ||| |||
------------------gtatggattattgtatgtgctcttactatgtatatcaggagcatactgttttatccattttctttgtctgtctt-tagGTGAAGAAGCATGTTAAGAAGGGCAAGAATGTTTCAATGGGATTTGGTTTTGTTGAGTTTGACTCTGTTGAAACTGCTACCGGTGTGTGCAAGGATCTAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatatttttgttttgttgcttctcttatgttggttctgttgctttcacaagtagGTGAAGAAGCATCTGAAAAATGGGAAAAATGTTTCTATGGGGTTTGGATTTGTTGAGTTTGACTCCCCTGAAACTGCTACAAATGTTTGCAGAGATTTAC
                                       ttgctttc  CT-rich tract
     tttttgtttt  TA-rich tract