1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgagtattcttgtccttgctgattttctgttgttcttgattgagtatattttaccgatgacagaatgttaataatttttatgtgatttcagTGGAATTTAATTGGGCAATTTCTCGGTTTTGCCGGATCTGGTTTATACGCCTACTACAAGCTCATTGGCAAATAACTTGTATAAGTCCTCTAGTGAAGTC
species | Glycine max |
transcript | GLYMA14G14360.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTACTATTGGCCTTGGCTGGATGATTTTTGGTGGGCTACCATTTGATTTT TGGAATTTAATTGGGCAATTTCTCGGTTTTGCCGGATCTGGTTTATACGCCEST: gi|254322552|gb|GR837966.1|GR837966
genomic: TTACTATTGGCCTTGGCTGGATGATTTTTGGTGGGCTACCATTTGATTTTgtgagtattc ... gtgatttcagTGGAATTTAATTGGGCAATTTCTCGGTTTTGCCGGATCTGGTTTATACGCC
EST: TTACTATTGGCCTTGGCTGGATGATTTTTGGTGGGCTACCATTTGATTTT TGGAATTTAATTGGGCAATTTCTCGGTTTTGCCGGATCTGGTTTATACGCCEST: gi|254346686|gb|GR856408.1|GR856408
genomic: TTACTATTGGCCTTGGCTGGATGATTTTTGGTGGGCTACCATTTGATTTTgtgagtattc ... gtgatttcagTGGAATTTAATTGGGCAATTTCTCGGTTTTGCCGGATCTGGTTTATACGCC
EST: TTACTATTGGCCTTGGCTGGATGATTTTTGGTGGGCTACCATTTGATTTT TGGAATTTAATTGGGCAATTTCTCGGTTTTGCCGGATCTGGTTTATACGCC
genomic: TTACTATTGGCCTTGGCTGGATGATTTTTGGTGGGCTACCATTTGATTTTgtgagtattc ... gtgatttcagTGGAATTTAATTGGGCAATTTCTCGGTTTTGCCGGATCTGGTTTATACGCC
tgattgagtatattttaccgatgacagaatgttaataatttttatgtgatttcagTGGAATTTAATTGGGCAATTTCTCGGTTTTGCCGGATCTGGTTTATACGCCTACTACAAGCTCATTGGCAAATAACTTGTATAAGTCCTCTAGTGAAGTC
tgttaat putative branch site (score: 3)
agaatgttaataattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtattcttgtccttgctgattttctgttgttcttgattgagtatattttaccgatgacagaatgttaataatttttatgtgatttcagTGGAATTTAATTGGGCAATTTCTCGGTTTTGCCGGATCTGGTTTATACGCCTACTACAAGCTCATTGGCAAATAACTTGTATAAGTCCTCTAGTGAAGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA