1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tcagagctgtgctcttataacttttctggagtttggatctccatattgaattgttttatttttgctagtgtgaatcactatttaattattttttctttagGTATTTCCGACATGCGGCTGGTTCACTTGTTATAATTTCAAAGAATTTGGCACAATACATTAATATAAACAG
species | Glycine max |
transcript | GLYMA14G14000.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GGAAAGCCATGGTATGAACCTGATTGGTGGAAATTTGGGGATGAAAAATC GTATTTCCGACATGCGGCTGGTTCACTTGTTATAATTTCAAAGAATTTGGCEST: gi|9898653|gb|BE607621.1|BE607621
genomic: GGAAAGCCATGGTATGAACCTGATTGGTGGAAATTTGGGGATGAAAAATCgtaagtaata ... ttttctttagGTATTTCCGACATGCGGCTGGTTCACTTGTTATAATTTCAAAGAATTTGGC
EST: ACCTGATTGGTGGAAATTCGGGGATGAAAAATC GTATTTCCGACTTGCGGCTGGTTCACTTGTTATAATTTCAAAGAATTTGGCEST: gi|27424174|gb|CA935694.1|CA935694
genomic: ACCTGATTGGTGGAAATTTGGGGATGAAAAATCgtaagtaata ... ttttctttagGTATTTCCGACATGCGGCTGGTTCACTTGTTATAATTTCAAAGAATTTGGC
EST: GGAAAGCCATGGTATGAACCTGATTGGTGGAAATTTGGGGATGAAAAATC GTATTTCCGACATGCGGCTGGTTCACTTGTTATAATTTCAAAGAATTTGGCEST: gi|193690980|gb|FK632737.1|FK632737
genomic: GGAAAGCCATGGTATGAACCTGATTGGTGGAAATTTGGGGATGAAAAATCgtaagtaata ... ttttctttagGTATTTCCGACATGCGGCTGGTTCACTTGTTATAATTTCAAAGAATTTGGC
EST: GGAAAGCCATGGTATGAACCTGATTGGTGGAAATTTGGGGATGAAAAATC GTATTTCCGACATGCGGCTGGTTCACTTGTTATAATTTCAAAGAATTTGGC
genomic: GGAAAGCCATGGTATGAACCTGATTGGTGGAAATTTGGGGATGAAAAATCgtaagtaata ... ttttctttagGTATTTCCGACATGCGGCTGGTTCACTTGTTATAATTTCAAAGAATTTGGC
ttgaattgttttatttttgctagtgtgaatcactatttaattattttttctttagGTATTTCCGACATGCGGCTGGTTCACTTGTTATAATTTCAAAGAATTTGGCACAATACATTAATATAAACAG
atttaat putative branch site (score: 4)
ttattttttcttt CT-rich tract
tgaatcactatttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcagagctgtgctcttataacttttctggagtttggatctccatattgaattgttttatttttgctagtgtgaatcactatttaattattttttctttagGTATTTCCGACATGCGGCTGGTTCACTTGTTATAATTTCAAAGAATTTGGCACAATACATTAATATAAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA