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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatttcctgttatgttcagttttggtgatgtactgacattttttctttttaatggttagatgataacatttctttagaaccaataattagcaatttatggtacattgcatttaaacttgatcagTTCTCGAGACGACCTAGACTTGGGACAACAATGGACATGAGAGCACAGCCATACAGACCGACTACACGCTGCGATGTGACTGCAATTCTCATTTTATATG

Basic information

species Glycine max
transcript GLYMA14G08450.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192324269|gb|FK018245.1|FK018245
EST:     GCCGGAAACCAGAGGGCTCTGCCTCTCAGAGGAGCTCAGCACT                         TTCTCGAGACGACCTAGACTTGGGACAACAATGGACATGAGAGCACAGCCA
genomic: GCCGGAAACCAGAGGGCTCTGCCTCTCAGAGGAGCTCAGCACTgtaagatttc ... acttgatcagTTCTCGAGACGACCTAGACTTGGGACAACAATGGACATGAGAGCACAGCCA
EST: gi|11688844|gb|BF596520.1|BF596520
EST:     ATCACATGCCGGAAACCAGAGGGCTCTGCCTCTCAGAGGAGCTCAGCACT                         TTCTCGAGACGACCTAGACTTGGGACAACAATGGACATGAGAGCACAGCCA
genomic: ATCACATGCCGGAAACCAGAGGGCTCTGCCTCTCAGAGGAGCTCAGCACTgtaagatttc ... acttgatcagTTCTCGAGACGACCTAGACTTGGGACAACAATGGACATGAGAGCACAGCCA
EST: gi|193436624|gb|FK400853.1|FK400853
EST:     ATCACATGCCGGAAACCAGAGGGCTCTGCCTCTCAGAGGAGCTCAGCACT                         TTCTCGAGACGACCTAGACTTGGGACAACAATGGACATGAGAGCACAGCCA
genomic: ATCACATGCCGGAAACCAGAGGGCTCTGCCTCTCAGAGGAGCTCAGCACTgtaagatttc ... acttgatcagTTCTCGAGACGACCTAGACTTGGGACAACAATGGACATGAGAGCACAGCCA
EST: gi|208291466|gb|GE092952.1|GE092952
EST:     GCCGGAAACCAGAGGGCTCTGCCTCTCAGAGGAGCTCAGCACT                         TTCTCGAGACGACCTAGACTTGGGACAACAATGGACATGAGAGCACAGCCA
genomic: GCCGGAAACCAGAGGGCTCTGCCTCTCAGAGGAGCTCAGCACTgtaagatttc ... acttgatcagTTCTCGAGACGACCTAGACTTGGGACAACAATGGACATGAGAGCACAGCCA
EST: gi|12689961|gb|BG156297.1|BG156297
EST:     ATCACATGCCGGAAACCAGAGGGCTCTGCCTCTCAGAGGAGCTCAGCACT                         TTCTCGAGACGACCTAGACTTGGGACAACAATGGACATGAGAGCACAGCCA
genomic: ATCACATGCCGGAAACCAGAGGGCTCTGCCTCTCAGAGGAGCTCAGCACTgtaagatttc ... acttgatcagTTCTCGAGACGACCTAGACTTGGGACAACAATGGACATGAGAGCACAGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctttagaaccaataattagcaatttatggtacattgcatttaaacttgatcagTTCTCGAGACGACCTAGACTTGGGACAACAATGGACATGAGAGCACAGCCATACAGACCGACTACACGCTGCGATGTGACTGCAATTCTCATTTTATATG
            aataattagcaattta  TA-rich tract