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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaactaatcagtggagcttaatttcaatttcataagcctgttcactttaagcattggccacctttaaatacttaaatttcagCTGGATGACGTAATTGATCTGGTGATTCCAAGAGGCAGCAACAAACTTGTTTCTCAAATCAAGAGTTCCACTAAAATTCCTGTTTTAGGTCACGCTG

Basic information

species Glycine max
transcript GLYMA14G07120.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G07120.1 (Glycine max), 3'ss of exon 9
lower sequence: LOC_Os05g38150.1 (Oryza sativa), 3'ss of exon 11
gtgaactaatcagtggagcttaatttcaatttcataagcctgttcactttaagcattggccacctttaaatacttaaatttcagCTGGATGACGTAATTGATCTGGTGATTCCAAGAGGCAGCAACAAACTTGTTTCTCAAATCAAGAGTTCCACTAAAATTCCTGTTTTAGGTCACGCTG
            ||| |    | | |  ||||   |||| |    |||   |   | |   | |    |||||      | ||||| ||||| || |||||||| || ||||||||||| || || || ||||| ||||||||||||   || ||||| ||||||||| | || || ||||
----------gtgtgtatgcaattctatattttcaaagcgttgatactaccaatttggctaaacccgtaatacactg--tgcagCTTGATGATGTCATTGATCTTGTCATTCCAAGAGGAAGTAATAAGCTTGTCTCTCAAATCAAGGCGTCAACTAAGATTCCTGTTCTTGGGCATGCTG

upper sequence: GLYMA14G07120.1 (Glycine max), 3'ss of exon 9
lower sequence: AC203754.4_FGT008 (Zea mays), 3'ss of exon 11
-------------gtgaactaa---tcagtggagcttaatttcaatttcataagcctgttcactttaagcattggccacctttaaatacttaaatttcagCTGGATGACGTAATTGATCTGGTGATTCCAAGAGGCAGCAACAAACTTGTTTCTCAAATCAAGAGTTCCACTAAAATTCCTGTTTTAGGTCACGCTG
              |  |||||   | || | |   || | | ||  | || |   |       |     ||  |||     | |  |   |   | |||||  |||| ||||||||||| || ||||||||||||||||| || || ||||| ||||||||||  || ||||| || |||||| | ||||| ||||
acgaaaattgctgatttactaaaggtgagcgtaatatattatgaaaatgatgattgtaccattatgcctaataagcctaaactcataatacactctacagCTTCATGATGTAATTGATCTTGTCATTCCAAGAGGCAGCAATAAGCTGGTTTCACAAATCAAGACATCAACTAAGATCCCTGTTCTTGGTCATGCTG

upper sequence: GLYMA14G07120.1 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G375504_T03 (Zea mays), 3'ss of exon 11
gtgaactaatcagtggagcttaatttcaatttcataagcctgttcactttaagcattggccacctttaaatacttaaatttcagCTGGATGACGTAATTGATCTGGTGATTCCAAGAGGCAGCAACAAACTTGTTTCTCAAATCAAGAGTTCCACTAAAATTCCTGTTTTAGGTCACGCTG
         | |||| |   ||   | ||  | || |  ||    |  |  |  ||  |||     | |  |  |    | ||||| ||||| || |||||||| || ||||||||||||||||| || || ||||| ||||||||    || ||||| || |||||  | ||||| || |
--------gtaagtgtaatatatcatgaaaataatgattctaccaatatgcatgataagcctaaactcataatatgttctacagCTTGATGATGTCATTGATCTTGTCATTCCAAGAGGCAGCAATAAGCTGGTTTCGCAAATCAAAGCATCAACTAAGATACCTGTCCTCGGTCATGCGG

upper sequence: GLYMA14G07120.1 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G094309_T01 (Zea mays), 3'ss of exon 4
gtgaactaatcagtggagcttaatttcaatttcataagcctgttcactttaagcattggccacctttaaatacttaaatttcagCTGGATGACGTAATTGATCTGGTGATTCCAAGAGGCAGCAACAAACTTGTTTCTCAAATCAAGAGTTCCACTAAAATTCCTGTTTTAGGTCACGCTG
         | || | |   || | | ||  | || |   |       |     ||  |||     | |  |   |   | |||||  |||| ||||||||||| || ||||||||||| ||||| || || ||||| |||||||||   || ||||| || |||||| | ||||| ||||
--------gtgagcgtaatatattatgaaaatgatgattgtaccattatgcctaataagcctaaactcataatacactctacagCTTCATGATGTAATTGATCTTGTCATTCCAAGAGGTAGCAATAAGCTGGTTTCACAAATCAAGGCATCAACTAAGATCCCTGTTCTTGGTCATGCTG

upper sequence: GLYMA14G07120.1 (Glycine max), 3'ss of exon 9
lower sequence: AT3G55610.2 (Arabidopsis thaliana), 3'ss of exon 12
gtgaactaatcagtggagcttaatttcaatttc---------ataagcctgttcactttaagcattggccacctttaaatacttaaatttcagCTGGATGACGTAATTGATCTGGTGATTCCAAGAGGCAGCAACAAACTTGTTTCTCAAATCAAGAGTTCCACTAAAATTCCTGTTTTAGGTCACGCTG
|| | |  ||   |  |  | |||  ||| | |         || ||| | ||    |||  |     ||  |  |  | | ||    | ||||| |||||||| |||||||| ||||| ||||||||||||||||| |||||||||||||| || |  || || ||||| || ||  |||| || ||||
gtaagcagatagatacatatgaatggcaagtccccagaagtgattagcttttttcacttatactggaacccaccatttacatttttggtacagCTTGATGACGTTATTGATCTTGTGATCCCAAGAGGCAGCAACAAGCTTGTTTCTCAAATAAAAAACTCGACGAAAATCCCAGTGCTAGGCCATGCTG

upper sequence: GLYMA14G07120.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv13s0019g02360.t01 (Vitis vinifera), 3'ss of exon 12
---------------gtgaactaatcagtggagcttaatttcaatttca---taagcctgttcactttaagcattg--gccacctttaaatacttaaattt-------cagCTGGATGACGTAATTGATCTGGTGATTCCAAGAGGCAGCAACAAACTTGTTTCTCAAATCAAGAGTTCCACTAAAATTCCTGTTTTAGGTCACGCTG
               | ||| | |||| ||    ||||   || ||  |   | ||  || | |  | ||  || |  |    |  | | || ||   |||       ||||| ||||| || || || || || || |||||||||||||| ||||||||||||||||| |||  ||| || |||||||||||| | || || ||||
gtgagctgatgtgctgagaa-tgatcattgatagttaaaaacatttgaactttcagaatggtgatatgaaaaatggatgttcacactcagtatttttgttttgtgctccagCTTGATGATGTGATCGACCTTGTAATCCCAAGAGGCAGCAATAAACTTGTTTCTCAAATAAAGGATTCAACAAAAATTCCTGTTCTGGGCCATGCTG

upper sequence: GLYMA14G07120.1 (Glycine max), 3'ss of exon 9
lower sequence: EFJ17662 (Selaginella moellendorffii), 3'ss of exon 12
gtgaactaatcagtggagcttaatttcaatttcataagcctgttcactttaagcattggccacctttaaatacttaaatttcagCTGGATGACGTAATTGATCTGGTGATTCCAAGAGGCAGCAACAAACTTGTTTCTCAAATCAAGAGTTCCACTAAAATTCCTGTTTTAGGTCACGCTG
                                  |||  || | |  |       || ||    ||   |  | |   |||||||| || || || ||||| || || || |||||||| ||||| ||||||||||| |||||||||   || || |||||||||||  | || || || |
---------------------------------gtaa--ctatactttcgtgctgttagctcgtttcttac-catgggtttcagCTTGACGATGTTATTGACCTCGTTATACCAAGAGGAAGCAATAAACTTGTTTCACAAATCAAGGAGTCTACGAAAATTCCTGTGCTGGGCCATGCCG

upper sequence: GLYMA14G07120.1 (Glycine max), 3'ss of exon 9
lower sequence: EFJ29127 (Selaginella moellendorffii), 3'ss of exon 12
gtgaactaatcagtggagcttaatttcaatttcataagcctgttcactttaagcattggccacctttaaatacttaaatttcagCTGGATGACGTAATTGATCTGGTGATTCCAAGAGGCAGCAACAAACTTGTTTCTCAAATCAAGAGTTCCACTAAAATTCCTGTTTTAGGTCACGCTG
                                  |||  || | |  ||      || ||    ||   |  | |   |||||||| || || || ||||| || || || |||||||| ||||| ||||||||||| |||||||||   || || |||||||||||  | || || || |
---------------------------------gtaa--ctatacttttgtgctgttagctcgtttcttac-catgggtttcagCTTGACGATGTTATTGACCTCGTTATACCAAGAGGAAGCAATAAACTTGTTTCACAAATCAAGGAGTCTACGAAAATTCCTGTGCTGGGCCATGCCG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193335926|gb|FK300626.1|FK300626
EST:     AACTTATAGGACTTGTGACCTCAAGGGAAGAAATCCCTGAGCTACTTAAG                         CTGGATGACGTAATTGATCTGGTGATTCCAAGAGGCAGCAACAAACTTGTT
genomic: AACTTATAGGACTTGTGACCTCAAGGGAAGAAATCCCTGAGCTACTTAAGgtgaactaat ... taaatttcagCTGGATGACGTAATTGATCTGGTGATTCCAAGAGGCAGCAACAAACTTGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcataagcctgttcactttaagcattggccacctttaaatacttaaatttcagCTGGATGACGTAATTGATCTGGTGATTCCAAGAGGCAGCAACAAACTTGTTTCTCAAATCAAGAGTTCCACTAAAATTCCTGTTTTAGGTCACGCTG
                                   tttaaatacttaaatt  TA-rich tract