Sequence
atgc intronic sequence ATGC exonic sequencegttccatgcttttctgtttccttattttcatccaatttgcaatattttctctcaaagcctttctttcacattaacacatttaattgaaaacattcagGATGTTGGAAAATCCATACTAGAGAGCTATTCAAGAGTTTTGGAGAGCATGGCATTTAACATTGTGGCTCGCATAGACGATTTGCTATATGTGGATGGCT
Basic information
species | Glycine max |
transcript | GLYMA14G06930.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G06930.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv13s0019g02710.t01 (Vitis vinifera), 3'ss of exon 6
gttcca-tgcttttctg----tttccttattttcatccaatttgcaatattttctctcaaagcctttctttcacattaacacatttaattgaaaacattcagGATGTTGGAAAATCCATACTAGAGAGCTATTCAAGAGTTTTGGAGAGCATGGCATTTAACATTGTGGCTCGCATAGACGATTTGCTATATGTGGATGGCT
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gttcaaattctcctccacggattgtcttctgtttgttc--ttggagatgcatttccttttcctctatttgtcactctgacaaatt-gtttttgtcttttcagGATGTGGGGAAATCCATTCTGGAAAGCTACTCAAGAGTTTTGGAAAGCCTGGCATTTAACATTGTGGCTCGTATTGATGATCTATTATATGTTGATGACCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298182172|gb|HO026347.1|HO026347EST: CGGGTCTAACTCAAACTACCTTGGATACCAGCAAGATCCAGTGCAACAAG GATGTTGGAAAATCCATACTAGAGAGCTATTCTAGAGTTTTGGAGAGCATG
genomic: CGGGTCTAACTCAAACTACCTTGGATACCAGCAAGATCCAGTGCAACAAGgttccatgct ... aaacattcagGATGTTGGAAAATCCATACTAGAGAGCTATTCAAGAGTTTTGGAGAGCATG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tattttctctcaaagcctttctttcacattaacacatttaattgaaaacattcagGATGTTGGAAAATCCATACTAGAGAGCTATTCAAGAGTTTTGGAGAGCATGGCATTTAACATTGTGGCTCGCATAGACGATTTGCTATATGTGGATGGCT
attaacacatttaatt TA-rich tract