1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atttagcaaattttccaacacttaaaccaacaatcaacagttgtttcacattattttactctttatcagactcattattttactcttttcttttttgtagATATTGGTTGGAGAGTCTATTGTAAAACAAAGTGATCCTGGAAAGGGAATCAGCAATCTCTTTGGCAAAGATATCTCTTTGGGTTGAAGTGAGCTATATT
species | Glycine max |
transcript | GLYMA14G05810.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TCTTTACCCCGGACGATATTGCCTATGTTCAGGAAGCTGGTGTTAAAGCT ATATTGGTTGGAGAGTCTATTGTAAAACAAAGTGATCCTGGAAAGGGAATCEST: gi|193417746|gb|FK384250.1|FK384250
genomic: TCTTTACCCCGGACGATATTGCCTATGTTCAGGAAGCTGGTGTTAAAGCTgtaagtattg ... ttttttgtagATATTGGTTGGAGAGTCTATTGTAAAACAAAGTGATCCTGGAAAGGGAATC
EST: TCTTTACCCCGGACGATATTGCCTATGTTCAGGAAGCTGGTGTTAAAGCT ATATTGGTTGGAGAGTCTATTGTAAAACAAAGTGATCCTGGAAAGGGAATCEST: gi|193531115|gb|FK484122.1|FK484122
genomic: TCTTTACCCCGGACGATATTGCCTATGTTCAGGAAGCTGGTGTTAAAGCTgtaagtattg ... ttttttgtagATATTGGTTGGAGAGTCTATTGTAAAACAAAGTGATCCTGGAAAGGGAATC
EST: TCTTTACCCCGGACGATATTGCCTATGTTCAGGAAGCTGGTGTTAAAGCT ATATTGGTTGGAGAGTCTATTGTAAAACAAAGTGATCCTGGAAAGGGAATCEST: gi|31309484|gb|CD394687.1|CD394687
genomic: TCTTTACCCCGGACGATATTGCCTATGTTCAGGAAGCTGGTGTTAAAGCTgtaagtattg ... ttttttgtagATATTGGTTGGAGAGTCTATTGTAAAACAAAGTGATCCTGGAAAGGGAATC
EST: TCTTTACCCCGGACGATATTGCCTATGTTCAGGAAGCTGGTGTTAAAGCT ATATTGGTTGGAGAGTCTATTGTAAAACCAAGTGATCCTGGAAAGGGAATCEST: gi|208242177|gb|GE043261.1|GE043261
genomic: TCTTTACCCCGGACGATATTGCCTATGTTCAGGAAGCTGGTGTTAAAGCTgtaagtattg ... ttttttgtagATATTGGTTGGAGAGTCTATTGTAAAACAAAGTGATCCTGGAAAGGGAATC
EST: TCTTTACCCCGGACGATATTGCCTATGTTCAGGAAGCTGGTGTTAAAGCT ATATTGGTTGGAGAATCTATTGTAAAACAAAGTGATCCTGGAAAGGGAATCEST: gi|193362895|gb|FK327469.1|FK327469
genomic: TCTTTACCCCGGACGATATTGCCTATGTTCAGGAAGCTGGTGTTAAAGCTgtaagtattg ... ttttttgtagATATTGGTTGGAGAGTCTATTGTAAAACAAAGTGATCCTGGAAAGGGAATC
EST: CTTTACCCCGGACGATATTGCCTATGTTCAGGAAGCTGGTGTTAAAAGCT ATATTGGTTGGAGAGTCTATTGTAAAACAAAGTGATCCTGGAAAGGGAATEST: gi|208302510|gb|GE097069.1|GE097069
genomic: CTTTACCCCGGACGATATTGCCTATGTTCAGGAAGCTGGTGTT-AAAGCTgtaagtattg ... ttttttgtagATATTGGTTGGAGAGTCTATTGTAAAACAAAGTGATCCTGGAAAGGGAAT
EST: TCTTTACCCCGGACGATATTGCCTATGTTCAGGAAGCTGGTGTTAAAGCT ATATTGGTTGGAGAGTCTATTGTAAAACAAAGTGATCCTGGAAAGGGAATCEST: gi|31312366|gb|CD397569.1|CD397569
genomic: TCTTTACCCCGGACGATATTGCCTATGTTCAGGAAGCTGGTGTTAAAGCTgtaagtattg ... ttttttgtagATATTGGTTGGAGAGTCTATTGTAAAACAAAGTGATCCTGGAAAGGGAATC
EST: TCTTTACCCCGGACGATATTGCCTATGTTCAGGAAGCTGGTGTTAAAGCT ATATTGGTTGGAGAGTCTATTGTAAAACAAAGTGATCCTGGAAAGGGAATCEST: gi|207770691|gb|GD745189.1|GD745189
genomic: TCTTTACCCCGGACGATATTGCCTATGTTCAGGAAGCTGGTGTTAAAGCTgtaagtattg ... ttttttgtagATATTGGTTGGAGAGTCTATTGTAAAACAAAGTGATCCTGGAAAGGGAATC
EST: TCTTTACCCCGGACGATATTGCCTATGTTCAGGAAGCTGGTGTTAAAGCT ATATTGGTTGGAGAGTCTATTATAAAACAAAGTGATCCTGGAAAGGGAATCEST: gi|120496969|gb|EH225136.1|EH225136
genomic: TCTTTACCCCGGACGATATTGCCTATGTTCAGGAAGCTGGTGTTAAAGCTgtaagtattg ... ttttttgtagATATTGGTTGGAGAGTCTATTGTAAAACAAAGTGATCCTGGAAAGGGAATC
EST: TCTTTACCCCGGACGATATTGCCTATGTTCAGGAAGCTGGTGTTAAAGCT ATATTGGTTGGAGAGTCTATTGTAAAACAAAGTGATCCTGGAAAGGGAATC
genomic: TCTTTACCCCGGACGATATTGCCTATGTTCAGGAAGCTGGTGTTAAAGCTgtaagtattg ... ttttttgtagATATTGGTTGGAGAGTCTATTGTAAAACAAAGTGATCCTGGAAAGGGAATC
tcacattattttactctttatcagactcattattttactcttttcttttttgtagATATTGGTTGGAGAGTCTATTGTAAAACAAAGTGATCCTGGAAAGGGAATCAGCAATCTCTTTGGCAAAGATATCTCTTTGGGTTGAAGTGAGCTATATT
ctcattattttactct CT-rich tract
attattttactctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttagcaaattttccaacacttaaaccaacaatcaacagttgtttcacattattttactctttatcagactcattattttactcttttcttttttgtagATATTGGTTGGAGAGTCTATTGTAAAACAAAGTGATCCTGGAAAGGGAATCAGCAATCTCTTTGGCAAAGATATCTCTTTGGGTTGAAGTGAGCTATATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG