1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gttgcagcctatattttattttacagtttatactgtcaataagattgagaaagctttactcatttcggtttgaaaacctaaatttgttggcgcaatgcagCTTCTGGTGAGCCACCATTACTTCTAGCAGCCTCCATTCACTGTGCCACAAGAGCAGCTGTAAAAGAGGCAAGGAAACAGCTTCTTTCATGGAGCAACCA
species | Glycine max |
transcript | GLYMA14G04950.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TCAAATCCTCAACAGTGGGCATCACCAGAAACGTGTTCTCTCTTCAAAAG CTTCTGGTGAGCCACCATTACTTCTAGCAGCCTCCATTCACTGTGCCACAAEST: gi|15203143|gb|BI425911.1|BI425911
genomic: TCAAATCCTCAACAGTGGGCATCACCAGAAACGTGTTCTCTCTTCAAAAGgtatgatcaa ... cgcaatgcagCTTCTGGTGAGCCACCATTACTTCTAGCAGCCTCCATTCACTGTGCCACAA
EST: TTTTATCCTCAACAGTGGGCATCACCAGAAACGTGTTCTCTCTTCAAAAG CTTCTGGTGAGCCACCATTACTTCTAGCAGCCTCCATTCACTGTGCCACAAEST: gi|7283564|gb|AW596170.1|AW596170
genomic: TCAAATCCTCAACAGTGGGCATCACCAGAAACGTGTTCTCTCTTCAAAAGgtatgatcaa ... cgcaatgcagCTTCTGGTGAGCCACCATTACTTCTAGCAGCCTCCATTCACTGTGCCACAA
EST: TCAAATCCTCAACAGTGGGCATCACCAGAAACGTGTTCTCTCTTCAAAAG CTTCTGGTGAGCCACCATTACTTCTAGCAGCCTCCATTCACTGTGCCACAAEST: gi|209697756|gb|BW663906.1|BW663906
genomic: TCAAATCCTCAACAGTGGGCATCACCAGAAACGTGTTCTCTCTTCAAAAGgtatgatcaa ... cgcaatgcagCTTCTGGTGAGCCACCATTACTTCTAGCAGCCTCCATTCACTGTGCCACAA
EST: TCAAATCCTCAACAGTGGGCATCACCAGAAACGTG-TCTCTCTTCAAAAG CTTCTGGTGAGCCACCATTACTTCTAGCAGCCTCCATTCACTGTGCCACAAEST: gi|33389715|gb|CA852922.1|CA852922
genomic: TCAAATCCTCAACAGTGGGCATCACCAGAAACGTGTTCTCTCTTCAAAAGgtatgatcaa ... cgcaatgcagCTTCTGGTGAGCCACCATTACTTCTAGCAGCCTCCATTCACTGTGCCACAA
EST: TCAAATCCTCAACAGTGGGCATCACCAGAAACGTGTTCTCTCTTCAAAAG CTTCTGGTGAGCCACCATTACTTCTAGCAGCCTCCATTCACTGTGCCACAA
genomic: TCAAATCCTCAACAGTGGGCATCACCAGAAACGTGTTCTCTCTTCAAAAGgtatgatcaa ... cgcaatgcagCTTCTGGTGAGCCACCATTACTTCTAGCAGCCTCCATTCACTGTGCCACAA
tgagaaagctttactcatttcggtttgaaaacctaaatttgttggcgcaatgcagCTTCTGGTGAGCCACCATTACTTCTAGCAGCCTCCATTCACTGTGCCACAAGAGCAGCTGTAAAAGAGGCAAGGAAACAGCTTCTTTCATGGAGCAACCA
acctaaa putative branch site (score: 3)
taaatttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgcagcctatattttattttacagtttatactgtcaataagattgagaaagctttactcatttcggtttgaaaacctaaatttgttggcgcaatgcagCTTCTGGTGAGCCACCATTACTTCTAGCAGCCTCCATTCACTGTGCCACAAGAGCAGCTGTAAAAGAGGCAAGGAAACAGCTTCTTTCATGGAGCAACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- tgcagcc
- - - - - - - - - - - - - - - tactgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgttgg