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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtatattgaaatggagcaagcatatattttttaatagattcttttaaactgaatgttcttagtttaaatttaattattttaattgacagCTATTTGTTGCAAATCAAAATAAGCCTCCTGAGATTGTCAGCATCCTTGTTACAAACAAACATAAGCTTTTGCAATTTTTGGACAACTTTAATAGCGACA

Basic information

species Glycine max
transcript GLYMA14G00940.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G00940.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv12s0057g00410.t01 (Vitis vinifera), 3'ss of exon 9
gtgtatattgaaatggagcaagcatatattttttaatagattcttttaaactga--atgttcttagtttaaatttaattattttaatt---gacagCTATTTGTTGCAAATCAAAATAAGCCTCCTGAGATTGTCAGCATCCTTGTTACAAACAAACATAAGCTTTTGCAATTTTTGGACAACTTTAATAGCGACA
     | |  | ||| |    |  |   ||||  | |   || |||||   | |  |  |||| |  ||   ||   | ||||| |||   || |||||||||||||||||||||||||||||||||| || |||||||| ||||| ||||| | |   || ||  | | ||| || | | |||| || |  || |
----gtgtc-atatgaaatttgactcagttttagagtgcctttttttattttaatcacattctaaagtttccttctctcatttttattactgatagCTATTTGTTGCAAATCAAAATAAGCCTCCTGAAATCGTCAGCATACTTGTCACAAATAGAAGCAAACTCCTACGATTCTTTGGCGACTTCAACATTGATA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagattcttttaaactgaatgttcttagtttaaatttaattattttaattgacagCTATTTGTTGCAAATCAAAATAAGCCTCCTGAGATTGTCAGCATCCTTGTTACAAACAAACATAAGCTTTTGCAATTTTTGGACAACTTTAATAGCGACA
                                          ttttaat  putative branch site (score: 3)
                                       ttatttt  CT-rich tract
       ttttaaactgaatgtt  TA-rich tract