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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttaaaatttgtctataatccataatttaacttcattgtgaccattaatggatgtacccttccatttatttctttttctcaagtaactattattttgcagGAAAAAGTAAACGTACATGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGG

Basic information

species Glycine max
transcript GLYMA14G00760.2
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G00760.2 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM5G830250_T01 (Zea mays), 3'ss of exon 10
----------------------------------------------gttaaaatttgtctataatccataat--ttaacttcattgtgaccat-taatgg----atgtacccttccatttatttctttttctcaagtaactat-tattt---tgcagGAAAAAGTAAACGTACATGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGG
                                              || ||||  |  || | ||    | |   ||  ||  |  |  | ||  |   |    |||||  |        ||    || |||| | ||||  | ||| |   ||||||||||    || || ||||||||||||||  |  | || ||||||||||| |||||||||||||||||| ||               
gtaagtgtcatctttactaaactaccattctttgtggattttaaaagtcaaaacatcactttcatatgcattcgctatttttttatttgctatgcagcagcaacatgtaatcgcatgacaatagtattctctctactaacggtatatgtgcgtgcagGAAAAGACTAATGTTCATGGTGGAGCTGTATCTTTAGGACATCCTCTTGGGTGCAGTGGTGCTCGCATTTTG---------------

upper sequence: GLYMA14G00760.2 (Glycine max), 3'ss of exon 9
lower sequence: Vv12s0057g01200.t01 (Vitis vinifera), 3'ss of exon 12
------gttaaaatttgtctata-atccataatttaacttcat---tgtgaccattaatggatgtacc--cttccatttatttctttttct-caagtaacta-----ttattttgcagGAAAAAGTAAACGTACATGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGG
        | |||| ||| | |   |   |   |      |||   |||   | | |    ||        ||| ||   |  ||| || | |||||| |||     ||   |||||||||||||| || || |||||||| |||||  |  |||| |||||||| ||||||||||| || || ||  |||| ||||||||||||
gtgagttcttaaatctgtgtgtgtgtgtgtgtgtgtgtcacatgcatgtactcctcaccttattgtttaatttctatcggtaccttgttttacaagtacctaccccatttgcttgcagGAAAAAGTTAATGTGCATGGTGGTGCTGTATCCTTGGGACATCCTCTAGGTTGCAGTGGAGCCCGAATCTTGGTCACACTTTTGGGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10848225|gb|BF070769.1|BF070769
EST:     GTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCG                         GAAAAAGTAAACGTACATGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGT
genomic: GTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCGgttagttttt ... tattttgcagGAAAAAGTAAACGTACATGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGT
EST: gi|192329989|gb|FK021575.1|FK021575
EST:     GTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCG                         GAAAAAGTAAACGTACATGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGT
genomic: GTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCGgttagttttt ... tattttgcagGAAAAAGTAAACGTACATGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGT
EST: gi|17021784|gb|BM092818.1|BM092818
EST:     GTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCG                         GAAAAAGTAAACGTACATGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGT
genomic: GTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCGgttagttttt ... tattttgcagGAAAAAGTAAACGTACATGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGT
EST: gi|15812294|gb|BI784569.1|BI784569
EST:     GTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCG                         GAAAAAGTAAACGTACATGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGT
genomic: GTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCGgttagttttt ... tattttgcagGAAAAAGTAAACGTACATGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGT
EST: gi|31472565|gb|CD414593.1|CD414593
EST:     GTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCG                         GAAAAAGTAAACGTACATGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGT
genomic: GTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCGgttagttttt ... tattttgcagGAAAAAGTAAACGTACATGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGT
EST: gi|151406879|gb|EV276694.1|EV276694
EST:     GTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCG                         GAAAAAGTAAACGTACATGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGT
genomic: GTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCGgttagttttt ... tattttgcagGAAAAAGTAAACGTACATGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGT
EST: gi|298184901|gb|HO030114.1|HO030114
EST:     GTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCG                         GAAAAAGTAAACGTACATGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGT
genomic: GTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCGgttagttttt ... tattttgcagGAAAAAGTAAACGTACATGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGT
EST: gi|192313001|gb|FK003653.1|FK003653
EST:     GTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCG                         GAAAAAGTAAACGTACATGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGT
genomic: GTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCGgttagttttt ... tattttgcagGAAAAAGTAAACGTACATGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGT
EST: gi|31472065|gb|CD414093.1|CD414093
EST:     GTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCG                         GAAAAAGTAAACGTACATGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGT
genomic: GTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCGgttagttttt ... tattttgcagGAAAAAGTAAACGTACATGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGT
EST: gi|192328380|gb|FK020091.1|FK020091
EST:     GTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCG                         GAAAAAGTAAACGTACATGGGTGGAGCTGTTGCACTGGGTCATCCTCTTGG
genomic: GTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCGgttagttttt ... tattttgcagGAAAAAGTAAACGTACATGG-TGGAGCTGTTGCACTGGGTCATCCTCTTGG
EST: gi|15203843|gb|BI426611.1|BI426611
EST:     GTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCG                         GAAAAAGTAAACGTACATGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGT
genomic: GTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCGgttagttttt ... tattttgcagGAAAAAGTAAACGTACATGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGT
EST: gi|209708680|gb|BW678861.1|BW678861
EST:     GTTGTGGCTCTTGCAAATCAGAAACTTCTTGGACTTAACTCG                         GAAAAAGTAAACTTACACGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGT
genomic: GTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCGgttagttttt ... tattttgcagGAAAAAGTAAACGTACATGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGT
EST: gi|10256517|gb|BE824283.1|BE824283
EST:     GTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCG                         GAAAAAGTAAACGTACATGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGT
genomic: GTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCGgttagttttt ... tattttgcagGAAAAAGTAAACGTACATGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGT
EST: gi|37994372|gb|CF806118.1|CF806118
EST:     GTTGTGGCTCTCGCAAATCAGAA-CTTCTTGGACTTAACTCG                         GAAAAAGTAAACGTACATGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGT
genomic: GTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCGgttagttttt ... tattttgcagGAAAAAGTAAACGTACATGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatggatgtacccttccatttatttctttttctcaagtaactattattttgcagGAAAAAGTAAACGTACATGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGG
                                   aagtaac  putative branch site (score: 2)
                                            ttatttt  putative PPT
                  atttatttctttttct  TA-rich tract