1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtattgcttttgttctttggattttaggtcgcactttctgtagctcatgtttcttaaccttgcttgctcattgttccatgatagGTTTTGTAAGCCAATTATGACGAAACCAAAGCCACTGCCACCCAAGCCAGCTACACCAGAAGCACCAGCAACCCCACCTCCTCAGGGTGGTGAGCAGCAG
species | Glycine max |
transcript | GLYMA13G43630.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CCTGTACTTTTGTCAGCTGACGTAAGAAAGAAAGCTGAAGCTGTGGACAG GTTTTGTAAGCCAATTATGACGAAACCAAAGCCACTGCCACCCAAGCCAGCEST: gi|192294395|gb|FG987324.1|FG987324
genomic: CCTGTACTTTTGTCAGCTGACGTAAGAAAGAAAGCTGAAGCTGTGGACAGgtattgcttt ... tccatgatagGTTTTGTAAGCCAATTATGACGAAACCAAAGCCACTGCCACCCAAGCCAGC
EST: CCTGTACTTTTGTCAGCTGACGTAAGAAAGAAAGCTGAAGCTGTGGACAG GTTTTGTAAGCCAATTATGACGAAACCAAAGCCACTGCCACCCAAGCCAGCEST: gi|11117948|gb|BF219541.1|BF219541
genomic: CCTGTACTTTTGTCAGCTGACGTAAGAAAGAAAGCTGAAGCTGTGGACAGgtattgcttt ... tccatgatagGTTTTGTAAGCCAATTATGACGAAACCAAAGCCACTGCCACCCAAGCCAGC
EST: CCTGTACTTTTGTCAGCTGACGTAAGAAAGAAAGCTGAAGCTGTGGACAG GTTTTGTAAGCCAATTATGACGAAACCAAAGCCACTGCCACCCAAGCCAGCEST: gi|23730841|gb|BU763524.1|BU763524
genomic: CCTGTACTTTTGTCAGCTGACGTAAGAAAGAAAGCTGAAGCTGTGGACAGgtattgcttt ... tccatgatagGTTTTGTAAGCCAATTATGACGAAACCAAAGCCACTGCCACCCAAGCCAGC
EST: CCTGTACTTTTGTCAGCTGACGTAAGAAAGAAAGCTGAAGCTGTGGACAG GTTTTGTAAGCCAATTATGACGAAACCAAAGCCACTGCCACCCAAGCCAGCEST: gi|11687354|gb|BF595030.1|BF595030
genomic: CCTGTACTTTTGTCAGCTGACGTAAGAAAGAAAGCTGAAGCTGTGGACAGgtattgcttt ... tccatgatagGTTTTGTAAGCCAATTATGACGAAACCAAAGCCACTGCCACCCAAGCCAGC
EST: CCTGTACTTTTGTCAGCTGACGTAAGAAAGAAAGCTGAAGCTGTGGACAG GTTTTGTAAGCCAATTATGACGAAACCAAAGCCACTGCCACCCAAGCCAGCEST: gi|6094746|gb|AW119475.1|AW119475
genomic: CCTGTACTTTTGTCAGCTGACGTAAGAAAGAAAGCTGAAGCTGTGGACAGgtattgcttt ... tccatgatagGTTTTGTAAGCCAATTATGACGAAACCAAAGCCACTGCCACCCAAGCCAGC
EST: CCTGTACTTTTGTCAGCTGACGTAAGAAAGAAAGCTGAAGCTGTGGACAG GTTTTGTAAGCCAATTATGACGAAACCAAAGCCACTGCCACCCAAGCCAGCEST: gi|9563876|gb|BE473385.1|BE473385
genomic: CCTGTACTTTTGTCAGCTGACGTAAGAAAGAAAGCTGAAGCTGTGGACAGgtattgcttt ... tccatgatagGTTTTGTAAGCCAATTATGACGAAACCAAAGCCACTGCCACCCAAGCCAGC
EST: CCTGTACTTTTGTCAGCTGACGTAAGAAAGAAAGCTGAAGCTGTGGACAG GTTTTGTAAGCCAATTATGACGAAACCAAAGCCACTGCCACCCAAGCCAGCEST: gi|12772061|gb|BG236988.1|BG236988
genomic: CCTGTACTTTTGTCAGCTGACGTAAGAAAGAAAGCTGAAGCTGTGGACAGgtattgcttt ... tccatgatagGTTTTGTAAGCCAATTATGACGAAACCAAAGCCACTGCCACCCAAGCCAGC
EST: TTTTGTCAGCTGACGTAAGAAAGAAAGCTGAAGCTGTGGACAG GTTTTGTAAGCCAATTATGACGAAACCAAAGCCACTGCCACCCAAGCCAGCEST: gi|298183420|gb|HO028633.1|HO028633
genomic: TTTTGTCAGCTGACGTAAGAAAGAAAGCTGAAGCTGTGGACAGgtattgcttt ... tccatgatagGTTTTGTAAGCCAATTATGACGAAACCAAAGCCACTGCCACCCAAGCCAGC
EST: CCTGTACTTTTGTCAGCTGACGTAAGAAAGAAAGCTGAAGCTGTGGACAG GTTTTGTAAGCCAATTATGACGAAACCGAAGCCACTGCCACCCAAGCCAGCEST: gi|254322030|gb|GR837444.1|GR837444
genomic: CCTGTACTTTTGTCAGCTGACGTAAGAAAGAAAGCTGAAGCTGTGGACAGgtattgcttt ... tccatgatagGTTTTGTAAGCCAATTATGACGAAACCAAAGCCACTGCCACCCAAGCCAGC
EST: CCTGTACTTTTGTCAGCTGACGTAAGAAAGAAAGCTGAAGCTGTGGACAG GTTTTGTAAGCCAATTATGACGAAACCAAAGCCACTGCCACCCAAGCCAGCEST: gi|209705993|gb|BW664864.1|BW664864
genomic: CCTGTACTTTTGTCAGCTGACGTAAGAAAGAAAGCTGAAGCTGTGGACAGgtattgcttt ... tccatgatagGTTTTGTAAGCCAATTATGACGAAACCAAAGCCACTGCCACCCAAGCCAGC
EST: CAGCTGACGTAAGAAAGAAAGCTGAAGCTGTGGACAG GTTTTGTAAGCCAATTATGACGAAACCAAAGCCACTGCCACCCAAGCCAGCEST: gi|298169033|gb|HO020393.1|HO020393
genomic: CAGCTGACGTAAGAAAGAAAGCTGAAGCTGTGGACAGgtattgcttt ... tccatgatagGTTTTGTAAGCCAATTATGACGAAACCAAAGCCACTGCCACCCAAGCCAGC
EST: CCTGTACTTTTGTCAGCTGACGTAAGAAAGAAAGCTGAAGCTGTGGACAG GTTTTGTAAGCCAATTATGACGAAACCAAAGCCACTGCCACCCAAGCCAGCEST: gi|22931443|gb|BU548582.1|BU548582
genomic: CCTGTACTTTTGTCAGCTGACGTAAGAAAGAAAGCTGAAGCTGTGGACAGgtattgcttt ... tccatgatagGTTTTGTAAGCCAATTATGACGAAACCAAAGCCACTGCCACCCAAGCCAGC
EST: CCTGTACTTTTGTCAGCTGACGTAAGAAAGAAAGCTGAAGCTGTGGACAG GTTTTGTAAGCCAATTATGACGAAACCAAAGCCACTGCCACCCAAGCCAGCEST: gi|8827941|gb|BE211671.1|BE211671
genomic: CCTGTACTTTTGTCAGCTGACGTAAGAAAGAAAGCTGAAGCTGTGGACAGgtattgcttt ... tccatgatagGTTTTGTAAGCCAATTATGACGAAACCAAAGCCACTGCCACCCAAGCCAGC
EST: CTGTACTTGTGTCAGCTGACGTAAGAAAGAAAGCTGAAGCT-TGGGACAG GTTTTGGGAGCCAATT-TGAAGAAACCCAAGCCEST: gi|192301841|gb|FG997699.1|FG997699
genomic: CTGTACTTTTGTCAGCTGACGTAAGAAAGAAAGCTGAAGCTGTGG-ACAGgtattgcttt ... tccatgatagGTTTTGTAAGCCAATTATGACGAAACCAAAGCC
EST: CCTGTACTTTTGTCAGCTGACGTAAGAAAGAAAGCTGAAGCTGTGGACAG GTTTTGTAAGCCAATTATGACGAAACCAAAGCCACTGCCACCCAAGCCAGCEST: gi|6963487|gb|AW432180.1|AW432180
genomic: CCTGTACTTTTGTCAGCTGACGTAAGAAAGAAAGCTGAAGCTGTGGACAGgtattgcttt ... tccatgatagGTTTTGTAAGCCAATTATGACGAAACCAAAGCCACTGCCACCCAAGCCAGC
EST: CCTGTACTTTTGTCAGCTGACGTAAGAAAGAAAGCTGAAGCTGTGGACAG GTTTTGTAAGCCAATTATGACGAAACCAAAGCCACTGCCACCCAAGCCAGC
genomic: CCTGTACTTTTGTCAGCTGACGTAAGAAAGAAAGCTGAAGCTGTGGACAGgtattgcttt ... tccatgatagGTTTTGTAAGCCAATTATGACGAAACCAAAGCCACTGCCACCCAAGCCAGC
cgcactttctgtagctcatgtttcttaaccttgcttgctcattgttccatgatagGTTTTGTAAGCCAATTATGACGAAACCAAAGCCACTGCCACCCAAGCCAGCTACACCAGAAGCACCAGCAACCCCACCTCCTCAGGGTGGTGAGCAGCAG
tcttaac putative branch site (score: 2)
ttgttcc putative PPT
tttcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgcttttgttctttggattttaggtcgcactttctgtagctcatgtttcttaaccttgcttgctcattgttccatgatagGTTTTGTAAGCCAATTATGACGAAACCAAAGCCACTGCCACCCAAGCCAGCTACACCAGAAGCACCAGCAACCCCACCTCCTCAGGGTGGTGAGCAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG