Sequence
atgc intronic sequence ATGC exonic sequencegtatgtgtcattttattttatattcttgggctttgagattcaattatttgagctgttgaagGTTTTGTGCAGGAAGAAAAGAATATAGAAGGATGTTACAAGCTAATAAGCTTACAGCCAGTTGACATGTTCCCACACACCCCTCATATTGAGTGTGTTTG
Basic information
species | Glycine max |
transcript | GLYMA13G42890.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G42890.2 (Glycine max), 3'ss of exon 9
lower sequence: Vv09s0002g02670.t01 (Vitis vinifera), 3'ss of exon 9
----gtatgtgtcattttattttatattcttgggctttgagattcaattatttgagctgttgaagGTTTTGTGCAGGAAGAAAAGAATATAGAAGGATGTTACAAGCTAATAAGCTTACAGCCAGTTGACATGTTCCCACACACCCCTCATATTGAGTGTGTTTG-----------
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gtatgtatctgtcttctctattggcagttcttatctccatagcttcatcgtttaagccggtgagaacttaatgtagGTGGAGCAAAATATTGAAGGATGTTACAAACTGAAAAGCTTACAGCCTGTGGACATGTTCCCGCACACTCCACATATTGAGTGTGTTTGCCTGTTGGAGCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|14990950|gb|BI316623.1|BI316623EST: GCAATCCTGCCACATGTGCACGCGACCTTGATTATCTTTGTCATGGTGTG GTTTTGTGCAGGAAGAAAAGAATATAGAAGGATGTTACAAGCTAATAAGCT
genomic: GCAATCCTGCCACATGTGCACGCGACCTTGATTATCTTTGTCATGGTGTGgtatgtgtca ... gctgttgaagGTTTTGTGCAGGAAGAAAAGAATATAGAAGGATGTTACAAGCTAATAAGCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtcattttattttatattcttgggctttgagattcaattatttgagctgttgaagGTTTTGTGCAGGAAGAAAAGAATATAGAAGGATGTTACAAGCTAATAAGCTTACAGCCAGTTGACATGTTCCCACACACCCCTCATATTGAGTGTGTTTG
tttattttatattctt TA-rich tract