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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatgtagattcattattttttttacgctaaagatttcttagatatgcgtgaattatgaagtcgagcttagtgtgatgagtttttttctctctcattgtagCCTATCTATTCCCTAGCAGCTTAAGTCCTGAGATTCTGGAAGGTTTACTTGGATCAGGTTTGCAATGATACAGCATCTAGATGTCACTGGAATCTTTGGC

Basic information

species Glycine max
transcript GLYMA13G41580.5
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7924759|gb|AW830785.1|AW830785
EST:     ATTAGCATCACTTTCTGGCTTTGCTGAACCCCTGGGAGTTATAATTGTAG                         CCTATCTATTCCCTAGCAGCTTAAGTCCTGAGATTCTGGAAGGTTTACTTG
genomic: ATTAGCATCACTTTCTGGCTTTGCTGAACCCCTGGGAGTTATAATTGTAGgtatgtcatc ... ctcattgtagCCTATCTATTCCCTAGCAGCTTAAGTCCTGAGATTCTGGAAGGTTTACTTG
EST: gi|192323380|gb|FK017081.1|FK017081
EST:     ATTAGCATCACTTTCTGGCTTTGCTGAACCCCTGGGAGTTATAATTGTAG                         CCTATCTATTCCCTAGCAGCTTAAGTTCTGAGATTCTGG
genomic: ATTAGCATCACTTTCTGGCTTTGCTGAACCCCTGGGAGTTATAATTGTAGgtatgtcatc ... ctcattgtagCCTATCTATTCCCTAGCAGCTTAAGTCCTGAGATTCTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcgtgaattatgaagtcgagcttagtgtgatgagtttttttctctctcattgtagCCTATCTATTCCCTAGCAGCTTAAGTCCTGAGATTCTGGAAGGTTTACTTGGATCAGGTTTGCAATGATACAGCATCTAGATGTCACTGGAATCTTTGGC
                                  tttttttctctctcat  CT-rich tract
     aattatgaa  TA-rich tract