1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tatgtagattcattattttttttacgctaaagatttcttagatatgcgtgaattatgaagtcgagcttagtgtgatgagtttttttctctctcattgtagCCTATCTATTCCCTAGCAGCTTAAGTCCTGAGATTCTGGAAGGTTTACTTGGATCAG
species | Glycine max |
transcript | GLYMA13G41580.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATTAGCATCACTTTCTGGCTTTGCTGAACCCCTGGGAGTTATAATTGTAG CCTATCTATTCCCTAGCAGCTTAAGTTCTGAGATTCTGGEST: gi|7029691|gb|AW459474.1|AW459474
genomic: ATTAGCATCACTTTCTGGCTTTGCTGAACCCCTGGGAGTTATAATTGTAGgtatgtcatc ... ctcattgtagCCTATCTATTCCCTAGCAGCTTAAGTCCTGAGATTCTGG
EST: ATTAGCATCACTTTCTGGCTTTGCTGAACCCCTGGGAGTTATAATTGTAG CCTATCTATTCCCTAGCAGCTTAAGTCCTGAGATTCTGGAAGGTTTACTTGEST: gi|192300847|gb|FG991169.1|FG991169
genomic: ATTAGCATCACTTTCTGGCTTTGCTGAACCCCTGGGAGTTATAATTGTAGgtatgtcatc ... ctcattgtagCCTATCTATTCCCTAGCAGCTTAAGTCCTGAGATTCTGGAAGGTTTACTTG
EST: ATTAGCATCACTTTCTGGCTTTGCTGA-CCCCTGGGAGTTATAATTGTAG CCTATCTATTCCCTAGCAGCTTAAGTCCTGAGATTCTGGA-GGTTTACTTG
genomic: ATTAGCATCACTTTCTGGCTTTGCTGAACCCCTGGGAGTTATAATTGTAGgtatgtcatc ... ctcattgtagCCTATCTATTCCCTAGCAGCTTAAGTCCTGAGATTCTGGAAGGTTTACTTG
gcgtgaattatgaagtcgagcttagtgtgatgagtttttttctctctcattgtagCCTATCTATTCCCTAGCAGCTTAAGTCCTGAGATTCTGGAAGGTTTACTTGGATCAG
tttttttctctctcat CT-rich tract
aattatgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgtagattcattattttttttacgctaaagatttcttagatatgcgtgaattatgaagtcgagcttagtgtgatgagtttttttctctctcattgtagCCTATCTATTCCCTAGCAGCTTAAGTCCTGAGATTCTGGAAGGTTTACTTGGATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG