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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaaccaagttttgggttttttctttcttttgagttgtacgcatgaaattttactgttatcccacttgatgttggacattctagtcaatcttcctaaaccaagcttctttctagGAAATTAATTTTCAAGGAGAAGGATCCATTCTGCATTATGGCCAGATAGTTCAGTACAGCACACTAGCCCCACTGTGGAATGAACTTAAGTTATCCTGTG

Basic information

species Glycine max
transcript GLYMA13G41520.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33389941|gb|CA853148.1|CA853148
EST:     GGATTCAAAGGATTGCTGTGGAACTCAAGATGAGTCCAGAAAAGATAAGG                         GAAATTAATTTTCAAGGAGAAGGATCCATTCTGCATTATGGCCAGATAGTT
genomic: GGATTCAAAGGATTGCTGTGGAACTCAAGATGAGTCCAGAAAAGATAAGGgtaagtaacc ... ttctttctagGAAATTAATTTTCAAGGAGAAGGATCCATTCTGCATTATGGCCAGATAGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcccacttgatgttggacattctagtcaatcttcctaaaccaagcttctttctagGAAATTAATTTTCAAGGAGAAGGATCCATTCTGCATTATGGCCAGATAGTTCAGTACAGCACACTAGCCCCACTGTGGAATGAACTTAAGTTATCCTGTG
                                tcctaaa  putative branch site (score: 2)
                                            cttctttct  putative PPT