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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagataatgcacttttcaattattttttcagtattatgatctcccagtttgcagaagtaatttaaaatagtgggaaaacaagaatccatatgattataacaacttgatgcctttgtgcattgcaaaaacttatttttcagtactaatgtaaccaattcagGGATAGCAAATACTATGGATCTTCCAGAGAAGTTACTTCCTCGTATATCAAGCCGAATGGGCATACAGAGGCTTTGCTTTGGCCCATATAATTATCAGCA

Basic information

species Glycine max
transcript GLYMA13G41490.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G41490.1 (Glycine max), 3'ss of exon 9
lower sequence: LOC_Os06g08790.1 (Oryza sativa), 3'ss of exon 9
gtaagataatgcacttttcaattattttttcagtattatgatctcccagtttgcagaagtaatttaaaatagtgggaaaacaagaatccatatgattataacaacttgatgcctttgtgcattgcaaaaacttatttttcagtact--aatgtaacc-aattcagGGATAGCAAATACTATGGATCTTCCAGAGAAGTTACTTCCTCGTATATCAAGCCGAATGGGCATACAGAGGCTTTGCTTTGGCCCATATAATTATCAGCA
                                                                                      | | |||  || |      || | |    ||||  ||   |   | | ||  | | |  |    ||| ||  ||  |||| ||||| || || ||||||||||| || |||||| | |||||||| ||||| || ||||| || ||  | || || ||||||||||||||||||| |||
-------------------------------------------------------------------------------------gtacctatacttttgtttgttttacg----tgtgattttagatggccttttaattactctttggctgttactgaacgcagGTATAGCGAACACAATGGATCTTCCTGAAAAGTTATTGCCTCGTATTTCAAGTCGGATGGGTATCCAACGACTGTGTTTTGGCCCATATAATTATCGGCA

upper sequence: GLYMA13G41490.1 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G168249_T01 (Zea mays), 3'ss of exon 9
gtaagataatgcacttttcaattattttttcagtattatgatctcccagtttgcagaagtaatttaaaatagtgggaaaacaagaatccatatgattataacaacttgatgcctttgtgcattgcaaaaacttatttttcagtactaatgtaaccaattcagGGATAGCAAATACTATGGATCTTCCAGAGAAGTTACTTCCTCGTATATCAAGCCGAATGGGCATACAGAGGCTTTGCTTTGGCCCATATAATTATCAGCA
                                                                                   | | | | |  ||| |  ||  |||    | ||   | |  |    ||| |    |      |  ||  |    | |||| |||||||| || |||||||||||||| |||||| | |||||||||||||| || ||||| || ||  | || || ||||| ||||| ||||||   ||
-----------------------------------------------------------------------------------gtaactaaactattcttccattttg---tccttacccttaccttttactcaccccttgtctgttttgccatggttgcagGTATAGCAAACACAATGGATCTTCCAGAAAAGTTATTGCCTCGTATATCAAGTCGGATGGGTATCCAACGACTGTGTTTTGGTCCATACAATTATAGACA

upper sequence: GLYMA13G41490.1 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G455243_T01 (Zea mays), 3'ss of exon 9
gtaagataatgcacttttcaattattttttcagtattatgatctcccagtttgcagaagtaatttaaaatagtgggaaaacaagaatccatatgattataacaacttgatgcctttgtgcattgcaaaaacttatttttcagtactaatgtaaccaattcagGGATAGCAAATACTATGGATCTTCCAGAGAAGTTACTTCCTCGTATATCAAGCCGAATGGGCATACAGAGGCTTTGCTTTGGCCCATATAATTATCAGCA
                                                                           | ||  ||  || | | | ||| |   ||| | | | |||      ||   |   ||| |||||  |      | | | ||    ||| |||||||| || |||||||||||||| || ||| | |||||||||||||| || |||||||| ||  | || || ||||| ||||| ||||||| |||
---------------------------------------------------------------------------gtaactaactattctttttatttt--taacctta-gtcttacctttttcttaccccttgtttttttg----gctatgatca---tagGTATAGCAAACACAATGGATCTTCCAGAAAAATTATTGCCTCGTATATCAAGTCGGATGGGCATTCAACGACTGTGTTTTGGTCCATACAATTATCGGCA

upper sequence: GLYMA13G41490.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv06s0004g00530.t01 (Vitis vinifera), 3'ss of exon 9
gtaagataatgcacttttcaa------ttattttttc-----agtattatgatctccca-----gtttgcagaagtaatttaaaatagtgggaaaacaagaatccatatgattataacaacttgatgcctttgt-gcattgcaaaaacttatttttcagtactaatgtaaccaattcagGGATAGCAAATACTATGGATCTTCCAGAGAAGTTACTTCCTCGTATATCAAGCCGAATGGGCATACAGAGGCTTTGCTTTGGCCCATATAATTATCAGCA
||| ||   |    |||| ||      |||| || ||     |  | |||   |    |     |||| |     ||   |||  || || ||     | |    |||  |||   |||||   | ||  |||| | | | |||  | | ||  |    ||  ||| ||   |||||||||||||||||||| |||||||||||||||||||| ||||| ||||| |||||||||||||| || || |||||||| ||||| || ||||||||||| ||
gtaggacttttatttttttaacaaggtttatcttctcttgtgacaaatatagccatgtaatgttgtttccttttatagaataaggtattgtgagtggcacaggtgata-aattgctacaaca-aaagcagttgtagtaatacaatta-taatgctgtgttataaatcta---aattcagGGATAGCAAATACCATGGATCTTCCAGAGAAGTTGCTTCCCCGTATTTCAAGCCGAATGGGTATTCAAAGGCTTTGTTTTGGGCCCTATAATTATCAACA

upper sequence: GLYMA13G41490.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv06s0004g02050.t01 (Vitis vinifera), 3'ss of exon 10
gtaagataatgcacttttcaa-----ttattttttc-----agtattatgatctccca-----gtttgcagaagtaatttaaaatagtgggaaaacaagaatccatatgattataacaacttgatgcctttgt-gcattgcaaaaacttatttttcagtactaatgtaaccaattcagGGATAGCAAATACTATGGATCTTCCAGAGAAGTTACTTCCTCGTATATCAAGCCGAATGGGCATACAGAGGCTTTGCTTTGGCCCATATAATTATCAGCA
||| ||   |    |||| |      |||| || ||     |  | |||   |    |     |||| |   | ||   |||  || || ||     | |    |||  |||    ||||   | ||  |||| | | | |||  | | ||  |    ||  ||| ||   |||||||||||||||||||| |||||||||||||||||||| ||||| ||||| |||||||||||||| || || |||||||| ||||| || ||||||||||| ||
gtaggactttatttttttaacgaggtttatcttctcttgtgacaaatatagccatgtaatgttgtttcctttaatagaataaggtattgtgagtggcacaggtgata-aattgctgcaaca-aaagcagttgtagtaatacaatta-taatgctgtgttataaatcta---aattcagGGATAGCAAATACCATGGATCTTCCAGAGAAGTTGCTTCCCCGTATTTCAAGCCGAATGGGTATTCAAAGGCTTTGTTTTGGGCCCTATAATTATCAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatgcctttgtgcattgcaaaaacttatttttcagtactaatgtaaccaattcagGGATAGCAAATACTATGGATCTTCCAGAGAAGTTACTTCCTCGTATATCAAGCCGAATGGGCATACAGAGGCTTTGCTTTGGCCCATATAATTATCAGCA
                  aaaaacttatttttca  TA-rich tract